Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   I5Z97_RS08835 Genome accession   NZ_CP065386
Coordinates   1811417..1811758 (+) Length   113 a.a.
NCBI ID   WP_021112680.1    Uniprot ID   -
Organism   Glaesserella parasuis strain LHDR_HPS_1_2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1806417..1816758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5Z97_RS08815 (I5Z97_08805) - 1807692..1808279 (-) 588 WP_035494230.1 FMN-dependent NADH-azoreductase -
  I5Z97_RS08820 (I5Z97_08810) waaF 1808375..1809427 (-) 1053 WP_196980216.1 lipopolysaccharide heptosyltransferase II -
  I5Z97_RS08825 (I5Z97_08815) - 1809436..1809792 (-) 357 WP_021111031.1 MliC family protein -
  I5Z97_RS08830 (I5Z97_08820) - 1809894..1811159 (-) 1266 WP_021112664.1 LysM-like peptidoglycan-binding domain-containing protein -
  I5Z97_RS08835 (I5Z97_08825) comEA/comE1 1811417..1811758 (+) 342 WP_021112680.1 ComEA family DNA-binding protein Machinery gene
  I5Z97_RS08845 (I5Z97_08835) epmA 1812761..1813741 (+) 981 WP_035495957.1 elongation factor P--(R)-beta-lysine ligase -
  I5Z97_RS08850 (I5Z97_08840) - 1813795..1814073 (+) 279 WP_005714674.1 DUF1778 domain-containing protein -
  I5Z97_RS08855 (I5Z97_08845) - 1814074..1814571 (+) 498 WP_021112650.1 GNAT family N-acetyltransferase -
  I5Z97_RS08860 (I5Z97_08850) - 1814585..1815367 (+) 783 WP_016527622.1 TatD family hydrolase -
  I5Z97_RS08865 (I5Z97_08855) - 1815407..1815934 (+) 528 WP_021112669.1 DUF1523 family protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12447.29 Da        Isoelectric Point: 9.8973

>NTDB_id=446741 I5Z97_RS08835 WP_021112680.1 1811417..1811758(+) (comEA/comE1) [Glaesserella parasuis strain LHDR_HPS_1_2]
MKKLSRYTFSLLFGLFSATTFAEEKVTTSTEHTPVVMQQVAATQKVNANVVNINTATASEIQDKLVGIGAKKAQAIVEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=446741 I5Z97_RS08835 WP_021112680.1 1811417..1811758(+) (comEA/comE1) [Glaesserella parasuis strain LHDR_HPS_1_2]
ATGAAAAAACTTTCTCGTTACACATTCAGTCTTTTATTTGGGCTTTTCTCTGCAACAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACATACACCGGTAGTGATGCAACAAGTCGCAGCGACACAAAAAGTAAATGCGAATGTTGTAAATATCA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTAGTCGGTATTGGAGCGAAAAAGGCTCAGGCAATTGTGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

99.115

100

0.991
  comE1/comEA Haemophilus influenzae Rd KW20

59.13

100

0.602