Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HP432_RS06145 Genome accession   NZ_CP053730
Coordinates   1102152..1102688 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain CP61_Sichuan     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1097152..1107688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP432_RS06125 (HP432_06130) aphA 1097513..1098154 (+) 642 Protein_1015 acid phosphatase AphA -
  HP432_RS06130 (HP432_06135) yjbQ 1098265..1098681 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HP432_RS06135 (HP432_06140) yjbR 1098685..1099041 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HP432_RS06140 (HP432_06145) uvrA 1099076..1101898 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HP432_RS06145 (HP432_06150) ssb 1102152..1102688 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HP432_RS06150 (HP432_06155) yjcB 1102787..1103068 (-) 282 WP_001295689.1 YjcB family protein -
  HP432_RS06155 (HP432_06160) pdeC 1103498..1105084 (+) 1587 WP_172615669.1 c-di-GMP phosphodiesterase PdeC -
  HP432_RS06160 (HP432_06165) soxS 1105087..1105410 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HP432_RS06165 (HP432_06170) soxR 1105496..1105960 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=446704 HP432_RS06145 WP_000168305.1 1102152..1102688(+) (ssb) [Escherichia coli strain CP61_Sichuan]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=446704 HP432_RS06145 WP_000168305.1 1102152..1102688(+) (ssb) [Escherichia coli strain CP61_Sichuan]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489