Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ST1A_RS09625 Genome accession   NZ_CP065384
Coordinates   1855253..1856353 (+) Length   366 a.a.
NCBI ID   WP_002947786.1    Uniprot ID   Q5LXI7
Organism   Streptococcus thermophilus strain 1A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1850253..1861353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST1A_RS09600 (ST1A_09570) pgsA 1850795..1851337 (-) 543 WP_011681759.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ST1A_RS09605 (ST1A_09575) - 1851350..1852207 (-) 858 WP_011681760.1 helix-turn-helix domain-containing protein -
  ST1A_RS09610 (ST1A_09580) - 1852266..1853543 (-) 1278 WP_011681761.1 pitrilysin family protein -
  ST1A_RS09615 (ST1A_09585) - 1853545..1854795 (-) 1251 WP_011681762.1 pitrilysin family protein -
  ST1A_RS09620 (ST1A_09590) yaaA 1854873..1855250 (+) 378 WP_002947785.1 S4 domain-containing protein YaaA -
  ST1A_RS09625 (ST1A_09595) recF 1855253..1856353 (+) 1101 WP_002947786.1 DNA replication/repair protein RecF Machinery gene
  ST1A_RS09630 (ST1A_09600) guaB 1856522..1858003 (-) 1482 WP_011227627.1 IMP dehydrogenase -
  ST1A_RS09635 (ST1A_09605) trpS 1858180..1859202 (-) 1023 WP_011681763.1 tryptophan--tRNA ligase -
  ST1A_RS09640 (ST1A_09610) - 1859630..1860502 (+) 873 WP_011681764.1 YitT family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 42173.29 Da        Isoelectric Point: 8.3913

>NTDB_id=446696 ST1A_RS09625 WP_002947786.1 1855253..1856353(+) (recF) [Streptococcus thermophilus strain 1A]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=446696 ST1A_RS09625 WP_002947786.1 1855253..1856353(+) (recF) [Streptococcus thermophilus strain 1A]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCATCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACGACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5LXI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

65.642

97.814

0.642
  recF Bacillus subtilis subsp. subtilis str. 168

42.935

100

0.432