Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HNV93_RS14895 Genome accession   NZ_CP053717
Coordinates   3072937..3073626 (+) Length   229 a.a.
NCBI ID   WP_196770545.1    Uniprot ID   -
Organism   Bacillus velezensis strain A2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3067937..3078626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNV93_RS14870 degS 3068220..3069383 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  HNV93_RS14875 degU 3069460..3070149 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HNV93_RS14880 - 3070247..3071095 (+) 849 WP_032876160.1 DegV family protein -
  HNV93_RS14885 comFA 3071204..3072589 (+) 1386 WP_032876163.1 DEAD/DEAH box helicase Machinery gene
  HNV93_RS14890 - 3072647..3072931 (+) 285 WP_003151389.1 competence protein ComFB -
  HNV93_RS14895 comFC 3072937..3073626 (+) 690 WP_196770545.1 phosphoribosyltransferase family protein Machinery gene
  HNV93_RS14900 - 3073700..3074119 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  HNV93_RS14905 flgM 3074189..3074455 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  HNV93_RS14910 - 3074470..3074952 (+) 483 WP_032876168.1 flagellar protein FlgN -
  HNV93_RS14915 flgK 3074968..3076485 (+) 1518 WP_032876170.1 flagellar hook-associated protein FlgK -
  HNV93_RS14920 flgL 3076497..3077414 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  HNV93_RS14925 - 3077505..3078074 (+) 570 WP_007407476.1 DUF6470 family protein -
  HNV93_RS14930 fliW 3078104..3078535 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25274.96 Da        Isoelectric Point: 8.4871

>NTDB_id=446600 HNV93_RS14895 WP_196770545.1 3072937..3073626(+) (comFC) [Bacillus velezensis strain A2]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAKGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=446600 HNV93_RS14895 WP_196770545.1 3072937..3073626(+) (comFC) [Bacillus velezensis strain A2]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCCGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CAAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594