Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HNV93_RS11925 Genome accession   NZ_CP053717
Coordinates   2489005..2489295 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain A2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2484005..2494295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNV93_RS11910 - 2484263..2485551 (-) 1289 Protein_2336 ubiquitin-like domain-containing protein -
  HNV93_RS11915 - 2485686..2486453 (-) 768 WP_032872179.1 TatD family hydrolase -
  HNV93_RS11920 metG 2486530..2488521 (-) 1992 WP_022552471.1 methionine--tRNA ligase -
  HNV93_RS11925 abrB 2489005..2489295 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  HNV93_RS11930 rsmI 2489345..2490226 (-) 882 WP_032872176.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  HNV93_RS11935 - 2490201..2490500 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  HNV93_RS11940 - 2490487..2491230 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  HNV93_RS11945 yabA 2491291..2491650 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  HNV93_RS11950 ricT 2491665..2492492 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  HNV93_RS11955 holB 2492495..2493484 (-) 990 WP_032872173.1 DNA polymerase III subunit delta' -
  HNV93_RS11960 - 2493496..2493936 (-) 441 WP_004264730.1 DUF327 family protein -
  HNV93_RS11965 darA 2493949..2494278 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=446587 HNV93_RS11925 WP_169510469.1 2489005..2489295(+) (abrB) [Bacillus velezensis strain A2]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=446587 HNV93_RS11925 WP_169510469.1 2489005..2489295(+) (abrB) [Bacillus velezensis strain A2]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979