Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   HNV93_RS10360 Genome accession   NZ_CP053717
Coordinates   2195502..2195939 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain A2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2190502..2200939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNV93_RS10345 - 2193362..2193724 (-) 363 WP_007409352.1 helix-turn-helix domain-containing protein -
  HNV93_RS10350 hxlA 2193956..2194591 (+) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  HNV93_RS10355 hxlB 2194588..2195145 (+) 558 WP_032872811.1 6-phospho-3-hexuloisomerase -
  HNV93_RS10360 nucA/comI 2195502..2195939 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  HNV93_RS10365 nin/comJ 2195960..2196358 (+) 399 WP_032872809.1 competence protein ComJ Regulator
  HNV93_RS10370 - 2196399..2196617 (-) 219 Protein_2059 family 1 glycosylhydrolase -
  HNV93_RS19680 - 2196542..2196895 (-) 354 WP_079891133.1 family 1 glycosylhydrolase -
  HNV93_RS10380 - 2196837..2197160 (-) 324 WP_032872805.1 YckD family protein -
  HNV93_RS10385 - 2197233..2197667 (-) 435 WP_021494203.1 RDD family protein -
  HNV93_RS10390 - 2197682..2198818 (-) 1137 WP_032872802.1 zinc-dependent alcohol dehydrogenase -
  HNV93_RS10395 - 2198883..2200085 (-) 1203 WP_032872800.1 GTP-binding protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=446582 HNV93_RS10360 WP_003156588.1 2195502..2195939(+) (nucA/comI) [Bacillus velezensis strain A2]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=446582 HNV93_RS10360 WP_003156588.1 2195502..2195939(+) (nucA/comI) [Bacillus velezensis strain A2]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAAACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641