Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I5M77_RS10925 Genome accession   NZ_CP065369
Coordinates   2277883..2278611 (+) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain 20-082A3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2272883..2283611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5M77_RS10910 (I5M77_10910) clpC 2273318..2275891 (-) 2574 WP_005460310.1 ATP-dependent chaperone ClpB Regulator
  I5M77_RS10915 (I5M77_10915) pgeF 2276039..2276767 (-) 729 WP_025557874.1 peptidoglycan editing factor PgeF -
  I5M77_RS10920 (I5M77_10920) rluD 2276769..2277746 (-) 978 WP_025792749.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I5M77_RS10925 (I5M77_10925) comL 2277883..2278611 (+) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  I5M77_RS10930 (I5M77_10930) - 2278746..2280227 (+) 1482 WP_025792747.1 lytic transglycosylase F -
  I5M77_RS10935 (I5M77_10935) hpf 2280558..2280884 (+) 327 WP_005468590.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  I5M77_RS10940 (I5M77_10940) pheA 2281128..2282306 (+) 1179 WP_005468591.1 prephenate dehydratase -
  I5M77_RS10945 (I5M77_10945) yjjX 2282331..2282864 (+) 534 WP_021450232.1 inosine/xanthosine triphosphatase -
  I5M77_RS10950 (I5M77_10950) trpR 2282913..2283224 (-) 312 WP_005497218.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=446444 I5M77_RS10925 WP_005460312.1 2277883..2278611(+) (comL) [Vibrio parahaemolyticus strain 20-082A3]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=446444 I5M77_RS10925 WP_005460312.1 2277883..2278611(+) (comL) [Vibrio parahaemolyticus strain 20-082A3]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCGACCCATGAAAAAATGGACTGGGTACT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTGGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATCGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405