Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   C270_RS01365 Genome accession   NC_018673
Coordinates   249987..250592 (+) Length   201 a.a.
NCBI ID   WP_014973763.1    Uniprot ID   K0D5M5
Organism   Leuconostoc carnosum JB16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 244987..255592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C270_RS01335 (C270_01120) rplJ 245244..245777 (+) 534 WP_014973757.1 50S ribosomal protein L10 -
  C270_RS01340 (C270_01125) rplL 245824..246189 (+) 366 WP_014973758.1 50S ribosomal protein L7/L12 -
  C270_RS01345 (C270_01130) - 246253..246882 (+) 630 WP_014973759.1 methyltransferase -
  C270_RS01350 (C270_01135) tadA 246872..247396 (+) 525 WP_014973760.1 tRNA adenosine(34) deaminase TadA -
  C270_RS01355 (C270_01140) - 247442..247960 (+) 519 WP_014973761.1 HD domain-containing protein -
  C270_RS01360 (C270_01145) dnaX 248186..249952 (+) 1767 WP_014973762.1 DNA polymerase III subunit gamma/tau -
  C270_RS01365 (C270_01150) recR 249987..250592 (+) 606 WP_014973763.1 recombination mediator RecR Machinery gene
  C270_RS01370 (C270_01155) - 250589..250849 (+) 261 WP_014973764.1 YaaL family protein -
  C270_RS01375 (C270_01160) tmk 250879..251523 (+) 645 WP_014973765.1 dTMP kinase -
  C270_RS01380 (C270_01165) - 251527..251856 (+) 330 WP_014973766.1 cyclic-di-AMP receptor -
  C270_RS01385 (C270_01170) - 251856..252779 (+) 924 WP_014973767.1 DNA polymerase III subunit delta -
  C270_RS01390 (C270_01175) rsmI 252781..253656 (+) 876 WP_014973768.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  C270_RS01395 (C270_01180) - 253699..254439 (+) 741 WP_014973769.1 acyl-ACP thioesterase domain-containing protein -
  C270_RS01400 (C270_01185) galE 254497..255492 (+) 996 WP_014973770.1 UDP-glucose 4-epimerase GalE -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22051.04 Da        Isoelectric Point: 4.5682

>NTDB_id=44643 C270_RS01365 WP_014973763.1 249987..250592(+) (recR) [Leuconostoc carnosum JB16]
MDYPEPIAKLIDNYTKLPGIGVKTATRLAFYTLGMDETDVFDFSKALTSAKQDLTFCEICGNITEKNVNPCVICQDDSRD
QSTIFVVENSRDVMAMENTRDYHGLYHVLNGIISPSAGTGPEDINLPSLIRRLSEHQEINEVIVGTNVNAEGEATAMYLA
RLLKPAGLKVTRLAHGLAVGSDIDYADQLTLIKAVQGRTEL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=44643 C270_RS01365 WP_014973763.1 249987..250592(+) (recR) [Leuconostoc carnosum JB16]
ATGGATTATCCAGAACCTATTGCAAAATTAATCGATAATTATACCAAATTACCAGGCATTGGTGTGAAAACAGCTACACG
CTTAGCCTTTTATACCTTAGGTATGGATGAAACCGATGTTTTTGATTTTTCAAAGGCCCTCACGAGTGCTAAACAAGATC
TGACATTTTGTGAAATCTGTGGCAATATTACAGAAAAAAATGTTAACCCATGTGTGATTTGCCAGGATGATTCGCGTGAC
CAATCCACGATTTTTGTGGTTGAAAACTCACGCGATGTCATGGCCATGGAAAATACTCGTGACTATCATGGTTTGTACCA
TGTCTTGAATGGTATTATTTCACCAAGTGCAGGAACAGGCCCAGAAGACATTAATTTACCTAGTCTTATCCGACGTTTAT
CAGAGCATCAAGAAATTAATGAAGTGATTGTTGGGACCAATGTCAATGCTGAAGGTGAGGCGACTGCCATGTATTTAGCA
CGCCTGCTGAAGCCTGCTGGGTTAAAAGTGACAAGGTTAGCACATGGACTAGCTGTTGGTTCTGATATTGACTACGCTGA
TCAATTAACGTTAATTAAGGCTGTGCAAGGACGAACAGAATTATGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-174)

RecR protein (RecR_ZnF)

(42-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0D5M5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

65.174

100

0.652
  recR Bacillus subtilis subsp. subtilis str. 168

59.204

100

0.592
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.444

98.507

0.438

Multiple sequence alignment