Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   I5044_RS05680 Genome accession   NZ_CP065354
Coordinates   1194952..1195824 (+) Length   290 a.a.
NCBI ID   WP_000620183.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JW_comp_novo     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1189952..1200824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5044_RS05660 (I5044_05660) sucC 1190067..1191233 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  I5044_RS05665 (I5044_05665) sucD 1191255..1192163 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  I5044_RS05670 (I5044_05670) - 1192423..1193508 (+) 1086 WP_229375658.1 LysM peptidoglycan-binding domain-containing protein -
  I5044_RS05675 (I5044_05675) fmhC 1193536..1194780 (+) 1245 WP_123138764.1 FemA/FemB family glycyltransferase FmhC -
  I5044_RS05680 (I5044_05680) dprA 1194952..1195824 (+) 873 WP_000620183.1 DNA-processing protein DprA Machinery gene
  I5044_RS05685 (I5044_05685) topA 1195997..1198072 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  I5044_RS05690 (I5044_05690) trmFO 1198228..1199535 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33532.95 Da        Isoelectric Point: 9.5191

>NTDB_id=446257 I5044_RS05680 WP_000620183.1 1194952..1195824(+) (dprA) [Staphylococcus aureus strain JW_comp_novo]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNINLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQIHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=446257 I5044_RS05680 WP_000620183.1 1194952..1195824(+) (dprA) [Staphylococcus aureus strain JW_comp_novo]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
AAATTTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAATACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.276

100

0.983
  dprA Staphylococcus aureus N315

97.931

100

0.979