Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   HPK20_RS12190 Genome accession   NZ_CP053664
Coordinates   2639432..2640049 (+) Length   205 a.a.
NCBI ID   WP_024374317.1    Uniprot ID   M1KD28
Organism   Vibrio fluvialis strain A8     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2634432..2645049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPK20_RS12165 (HPK20_12185) panC 2634891..2635772 (+) 882 WP_020331996.1 pantoate--beta-alanine ligase -
  HPK20_RS12170 (HPK20_12190) - 2635830..2636600 (-) 771 WP_020331995.1 ABC transporter permease -
  HPK20_RS12175 (HPK20_12195) - 2636605..2637522 (-) 918 WP_171933906.1 ABC transporter ATP-binding protein -
  HPK20_RS12180 (HPK20_12200) can 2637866..2638534 (+) 669 WP_020331992.1 carbonate dehydratase -
  HPK20_RS12185 (HPK20_12205) hpt 2638584..2639111 (-) 528 WP_020331991.1 hypoxanthine phosphoribosyltransferase -
  HPK20_RS12190 (HPK20_12210) opaR 2639432..2640049 (+) 618 WP_024374317.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  HPK20_RS12195 (HPK20_12215) lpdA 2640171..2641598 (-) 1428 WP_020331989.1 dihydrolipoyl dehydrogenase -
  HPK20_RS12200 (HPK20_12220) aceF 2641857..2643752 (-) 1896 WP_171933907.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23890.30 Da        Isoelectric Point: 6.2346

>NTDB_id=446132 HPK20_RS12190 WP_024374317.1 2639432..2640049(+) (opaR) [Vibrio fluvialis strain A8]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTYVVRQFSNFL
TDNIDLDIHAKENLTNITDEMVKLANEDCHWLKVWFEWSASTRDEVWPLFVSSNRTNQLLVKNMFSKAIERGEVCEQHDP
EDLATLFHGVCYSLFVQANRVRDEGYMRKLVKSYLDMLCIYKRDH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=446132 HPK20_RS12190 WP_024374317.1 2639432..2640049(+) (opaR) [Vibrio fluvialis strain A8]
ATGGACGCATCTATAGAGAAACGCCCTAGAACGCGGCTATCTCCTCAAAAGCGTAAACTCCAGTTGATGGAAATCGCGCT
GGAAGTGTTTGCAAAACGAGGCATTGGCCGTGGTGGTCATGCGGATATCGCAGAAATTGCTCAAGTTTCTGTCGCCACCG
TGTTCAACTACTTCCCTACTCGTGAAGATTTGGTCGACGACGTACTGACTTACGTGGTTCGCCAGTTTTCCAACTTTCTC
ACCGACAACATCGATCTCGATATTCACGCGAAAGAGAACCTCACCAACATCACCGATGAAATGGTTAAGCTGGCCAATGA
AGATTGCCACTGGCTGAAAGTGTGGTTTGAATGGAGCGCCTCGACGCGTGACGAAGTATGGCCACTGTTTGTATCCAGTA
ACCGTACCAACCAGTTGCTGGTGAAGAACATGTTCTCGAAAGCCATCGAGCGCGGTGAAGTGTGTGAACAGCACGACCCT
GAAGATCTGGCGACGCTGTTCCACGGTGTCTGCTACTCACTGTTTGTGCAAGCCAACCGCGTTCGCGATGAAGGCTACAT
GCGTAAACTGGTGAAAAGCTACCTGGACATGCTGTGCATCTATAAACGCGATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M1KD28

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

81.188

98.537

0.8
  hapR Vibrio cholerae C6706

78.713

98.537

0.776
  hapR Vibrio cholerae strain A1552

78.713

98.537

0.776