Detailed information
Bioinformatically predicted
Overview
| Name | ctsF | Type | Machinery gene |
| Locus tag | HPE59_RS07455 | Genome accession | NZ_CP053659 |
| Coordinates | 1448778..1449959 (-) | Length | 393 a.a. |
| NCBI ID | WP_002851165.1 | Uniprot ID | Q7WYI5 |
| Organism | Campylobacter jejuni strain 2016-IZSVE-19-111250 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1408745..1454398 | 1448778..1449959 | within | 0 |
Gene organization within MGE regions
Location: 1408745..1454398
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPE59_RS07160 (HPE59_07165) | - | 1408745..1409176 (+) | 432 | Protein_1402 | DUF2400 family protein | - |
| HPE59_RS07165 (HPE59_07170) | - | 1409270..1409971 (-) | 702 | WP_052778344.1 | hypothetical protein | - |
| HPE59_RS07170 (HPE59_07175) | - | 1409971..1410645 (-) | 675 | WP_002791430.1 | S24 family peptidase | - |
| HPE59_RS07175 (HPE59_07180) | - | 1410795..1410995 (+) | 201 | WP_002826948.1 | hypothetical protein | - |
| HPE59_RS07180 (HPE59_07185) | - | 1410992..1413067 (+) | 2076 | WP_032593272.1 | DDE-type integrase/transposase/recombinase | - |
| HPE59_RS07185 (HPE59_07190) | - | 1413138..1414061 (+) | 924 | WP_052778345.1 | AAA family ATPase | - |
| HPE59_RS07190 (HPE59_07195) | - | 1414064..1414255 (+) | 192 | WP_171849138.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| HPE59_RS07195 (HPE59_07200) | - | 1414252..1414437 (+) | 186 | WP_002824157.1 | hypothetical protein | - |
| HPE59_RS07200 (HPE59_07205) | - | 1414494..1414835 (+) | 342 | WP_002791419.1 | DUF4406 domain-containing protein | - |
| HPE59_RS07205 (HPE59_07210) | - | 1414942..1415427 (+) | 486 | WP_052782897.1 | host-nuclease inhibitor Gam family protein | - |
| HPE59_RS07210 (HPE59_07215) | - | 1415424..1415609 (+) | 186 | WP_002824160.1 | hypothetical protein | - |
| HPE59_RS07215 (HPE59_07220) | - | 1415673..1415945 (+) | 273 | WP_002791414.1 | hypothetical protein | - |
| HPE59_RS07220 (HPE59_07225) | - | 1415942..1416367 (+) | 426 | WP_052774289.1 | YopX family protein | - |
| HPE59_RS07225 (HPE59_07230) | - | 1416476..1417438 (+) | 963 | WP_041160246.1 | hypothetical protein | - |
| HPE59_RS07230 (HPE59_07235) | - | 1417435..1417704 (+) | 270 | WP_002784531.1 | hypothetical protein | - |
| HPE59_RS07235 (HPE59_07240) | - | 1417704..1418396 (+) | 693 | WP_041160245.1 | hypothetical protein | - |
| HPE59_RS07240 (HPE59_07245) | - | 1418393..1418842 (+) | 450 | WP_002876315.1 | regulatory protein GemA | - |
| HPE59_RS07245 (HPE59_07250) | - | 1418889..1419164 (+) | 276 | WP_002873721.1 | hypothetical protein | - |
| HPE59_RS07250 (HPE59_07255) | - | 1419156..1419827 (-) | 672 | WP_100620450.1 | endonuclease | - |
| HPE59_RS07255 (HPE59_07260) | - | 1419921..1420205 (+) | 285 | WP_052778348.1 | Mor transcription activator family protein | - |
| HPE59_RS07260 (HPE59_07265) | - | 1420202..1421179 (-) | 978 | WP_002852060.1 | tail protein | - |
| HPE59_RS07265 (HPE59_07270) | - | 1421173..1421364 (-) | 192 | WP_002784520.1 | tail protein X | - |
| HPE59_RS07270 (HPE59_07275) | - | 1421357..1421731 (-) | 375 | WP_002876309.1 | phage tail protein | - |
| HPE59_RS07275 (HPE59_07280) | - | 1421857..1423095 (-) | 1239 | WP_171849139.1 | phage minor head protein | - |
| HPE59_RS07280 (HPE59_07285) | - | 1423097..1424467 (-) | 1371 | WP_002872709.1 | DUF935 family protein | - |
| HPE59_RS07285 (HPE59_07290) | terL | 1424477..1426147 (-) | 1671 | WP_038401728.1 | phage terminase large subunit | - |
| HPE59_RS07290 (HPE59_07295) | - | 1426147..1426746 (-) | 600 | WP_002803360.1 | DUF1804 family protein | - |
| HPE59_RS07295 (HPE59_07300) | - | 1426739..1427197 (-) | 459 | WP_002855185.1 | phage protein Gp36 family protein | - |
| HPE59_RS07300 (HPE59_07305) | - | 1427312..1428289 (-) | 978 | WP_002865469.1 | major capsid protein | - |
| HPE59_RS07305 (HPE59_07310) | - | 1428292..1428819 (-) | 528 | WP_002784505.1 | hypothetical protein | - |
| HPE59_RS07310 (HPE59_07315) | - | 1428822..1429637 (-) | 816 | WP_052798387.1 | phage protease | - |
| HPE59_RS07315 (HPE59_07320) | - | 1429639..1430073 (-) | 435 | WP_002784501.1 | hypothetical protein | - |
| HPE59_RS07320 (HPE59_07325) | - | 1430221..1430610 (+) | 390 | WP_052798388.1 | D-Ala-D-Ala carboxypeptidase family metallohydrolase | - |
| HPE59_RS07325 (HPE59_07330) | - | 1430621..1430962 (+) | 342 | WP_002876558.1 | hypothetical protein | - |
| HPE59_RS07330 (HPE59_07335) | - | 1430959..1431207 (+) | 249 | WP_052798389.1 | hypothetical protein | - |
| HPE59_RS07335 (HPE59_07340) | - | 1431319..1431633 (+) | 315 | WP_052778349.1 | phage holin family protein | - |
| HPE59_RS07340 (HPE59_07345) | - | 1431633..1432265 (+) | 633 | WP_052777356.1 | phage baseplate assembly protein V | - |
| HPE59_RS07345 (HPE59_07350) | - | 1432274..1432465 (+) | 192 | WP_002795238.1 | hypothetical protein | - |
| HPE59_RS07350 (HPE59_07355) | - | 1432462..1432752 (+) | 291 | WP_052784877.1 | GPW/gp25 family protein | - |
| HPE59_RS07355 (HPE59_07360) | - | 1432749..1433915 (+) | 1167 | WP_052798390.1 | baseplate J/gp47 family protein | - |
| HPE59_RS07360 (HPE59_07365) | - | 1433912..1434532 (+) | 621 | WP_002855112.1 | phage tail protein I | - |
| HPE59_RS07365 (HPE59_07370) | - | 1434532..1435563 (+) | 1032 | WP_171849140.1 | phage tail protein | - |
| HPE59_RS07370 (HPE59_07375) | - | 1435588..1436094 (+) | 507 | WP_002855083.1 | DUF4376 domain-containing protein | - |
| HPE59_RS07375 (HPE59_07380) | - | 1436091..1436462 (+) | 372 | WP_002938257.1 | DUF1353 domain-containing protein | - |
| HPE59_RS07380 (HPE59_07385) | - | 1436561..1437568 (+) | 1008 | WP_171849141.1 | hypothetical protein | - |
| HPE59_RS07385 (HPE59_07390) | - | 1437587..1438780 (+) | 1194 | WP_052778352.1 | phage tail sheath family protein | - |
| HPE59_RS07390 (HPE59_07395) | - | 1438807..1439316 (+) | 510 | WP_002865376.1 | phage major tail tube protein | - |
| HPE59_RS07395 (HPE59_07400) | - | 1439469..1439708 (+) | 240 | WP_002843342.1 | phage tail assembly protein | - |
| HPE59_RS07400 (HPE59_07405) | - | 1439820..1440125 (-) | 306 | WP_002791365.1 | hypothetical protein | - |
| HPE59_RS07405 (HPE59_07410) | - | 1440167..1442389 (+) | 2223 | WP_041160232.1 | phage tail tape measure protein | - |
| HPE59_RS07410 (HPE59_07415) | - | 1442393..1442881 (+) | 489 | WP_052778353.1 | phage virion morphogenesis protein | - |
| HPE59_RS07415 (HPE59_07420) | - | 1442986..1443801 (+) | 816 | WP_002870153.1 | DNA adenine methylase | - |
| HPE59_RS07420 (HPE59_07425) | - | 1443829..1444116 (-) | 288 | WP_002865289.1 | hypothetical protein | - |
| HPE59_RS07425 (HPE59_07430) | - | 1444196..1444390 (-) | 195 | WP_002843339.1 | hypothetical protein | - |
| HPE59_RS07430 (HPE59_07435) | - | 1444400..1444720 (-) | 321 | WP_038400980.1 | hypothetical protein | - |
| HPE59_RS07435 (HPE59_07440) | - | 1444801..1445430 (-) | 630 | WP_052778354.1 | S24 family peptidase | - |
| HPE59_RS07440 (HPE59_07445) | - | 1445515..1447230 (-) | 1716 | WP_052778355.1 | P-loop NTPase fold protein | - |
| HPE59_RS07445 (HPE59_07450) | - | 1447676..1448017 (+) | 342 | Protein_1459 | TIGR02757 family protein | - |
| HPE59_RS07450 (HPE59_07455) | - | 1448021..1448785 (+) | 765 | WP_002851426.1 | TSUP family transporter | - |
| HPE59_RS07455 (HPE59_07460) | ctsF | 1448778..1449959 (-) | 1182 | WP_002851165.1 | type II secretion system F family protein | Machinery gene |
| HPE59_RS07460 (HPE59_07465) | ctsE | 1449956..1451515 (-) | 1560 | WP_002864463.1 | GspE/PulE family protein | Machinery gene |
| HPE59_RS07465 (HPE59_07470) | ctsX | 1451505..1452092 (-) | 588 | WP_002851370.1 | membrane protein | Machinery gene |
| HPE59_RS07470 (HPE59_07475) | ctsP | 1452096..1452704 (-) | 609 | WP_002851464.1 | ATP-binding protein | Machinery gene |
| HPE59_RS07475 (HPE59_07480) | ctsD | 1452697..1454109 (-) | 1413 | WP_002862130.1 | pilus (MSHA type) biogenesis protein MshL | Machinery gene |
| HPE59_RS07480 (HPE59_07485) | ctsR | 1454087..1454398 (-) | 312 | WP_015016496.1 | hypothetical protein | Machinery gene |
Sequence
Protein
Download Length: 393 a.a. Molecular weight: 45764.35 Da Isoelectric Point: 9.0938
>NTDB_id=446057 HPE59_RS07455 WP_002851165.1 1448778..1449959(-) (ctsF) [Campylobacter jejuni strain 2016-IZSVE-19-111250]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN
Nucleotide
Download Length: 1182 bp
>NTDB_id=446057 HPE59_RS07455 WP_002851165.1 1448778..1449959(-) (ctsF) [Campylobacter jejuni strain 2016-IZSVE-19-111250]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsF | Campylobacter jejuni subsp. jejuni 81-176 |
99.235 |
99.746 |
0.99 |