Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   I3J23_RS18290 Genome accession   NZ_CP065159
Coordinates   3594701..3595132 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain GXU-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3589701..3600132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3J23_RS18270 (I3J23_18270) spoVS 3590271..3590531 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  I3J23_RS18275 (I3J23_18275) tdh 3590789..3591835 (+) 1047 WP_024085310.1 L-threonine 3-dehydrogenase -
  I3J23_RS18280 (I3J23_18280) - 3591848..3593026 (+) 1179 WP_088037143.1 glycine C-acetyltransferase -
  I3J23_RS18285 (I3J23_18285) miaB 3593169..3594698 (+) 1530 WP_048367261.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  I3J23_RS18290 (I3J23_18290) ymcA 3594701..3595132 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  I3J23_RS18295 (I3J23_18295) cotE 3595386..3595931 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  I3J23_RS18300 (I3J23_18300) hexA 3596050..3598635 (+) 2586 WP_048367486.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=445869 I3J23_RS18290 WP_003154113.1 3594701..3595132(+) (ymcA) [Bacillus amyloliquefaciens strain GXU-1]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=445869 I3J23_RS18290 WP_003154113.1 3594701..3595132(+) (ymcA) [Bacillus amyloliquefaciens strain GXU-1]
ATGACGCTTTACTCAAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAGCAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATTATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916