Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   I3J23_RS18060 Genome accession   NZ_CP065159
Coordinates   3540830..3542098 (+) Length   422 a.a.
NCBI ID   WP_088005384.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GXU-1     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3535830..3547098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3J23_RS18035 (I3J23_18035) pyrH 3536625..3537347 (+) 723 WP_003154213.1 UMP kinase -
  I3J23_RS18040 (I3J23_18040) frr 3537350..3537907 (+) 558 WP_003154212.1 ribosome recycling factor -
  I3J23_RS18045 (I3J23_18045) - 3538033..3538815 (+) 783 WP_003154211.1 isoprenyl transferase -
  I3J23_RS18050 (I3J23_18050) - 3538819..3539616 (+) 798 WP_021734132.1 phosphatidate cytidylyltransferase -
  I3J23_RS18055 (I3J23_18055) dxr 3539672..3540823 (+) 1152 WP_003154208.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  I3J23_RS18060 (I3J23_18060) eeP 3540830..3542098 (+) 1269 WP_088005384.1 RIP metalloprotease RseP Regulator
  I3J23_RS18065 (I3J23_18065) - 3542130..3543824 (+) 1695 WP_043867094.1 proline--tRNA ligase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46554.46 Da        Isoelectric Point: 6.5190

>NTDB_id=445866 I3J23_RS18060 WP_088005384.1 3540830..3542098(+) (eeP) [Bacillus amyloliquefaciens strain GXU-1]
MFVNTVIAFIIIFGTLVFFHELGHLLLAQRAGILCREFAIGFGPKIFSFKKNETVYTIRLLPVGGFVRMAGEDPEMIEVK
PGYTVGLLFNKEDEVEKVIINQKEKYPDALIIEVETADLEHEMKITGYEQGKEDELAGFTVSQTSFFIVDGEEVQIAPYN
RQFGSKPVWKRIKAIAAGPIMNFILAYVILVMLGFIQGVPSNQPELGKLTDNGRAAAAGLKEGDYIQSINGEKMRSWTDI
VTAVKENPGKKIDVAVKRDGKSFHISVTPEAVKDENKKTIGRFGSYAPTEKGALAAIAYGATSTVDVTKAILTNLSKLVT
GQFKLDMLSGPVGIYDMTDQVAKTGIINLFQFAAFLSINLGIVNLLPIPALDGGRLLFLFIEAIRGKPINRDKEAFVVFI
GVAFLMLLMLVVTWNDIQRLFL

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=445866 I3J23_RS18060 WP_088005384.1 3540830..3542098(+) (eeP) [Bacillus amyloliquefaciens strain GXU-1]
ATGTTCGTGAATACAGTTATCGCGTTTATTATTATTTTCGGAACGCTCGTTTTTTTCCATGAGCTCGGGCATTTATTGCT
CGCCCAAAGAGCGGGAATCCTTTGCCGTGAATTTGCGATCGGCTTCGGCCCTAAAATCTTTTCATTTAAAAAGAATGAAA
CCGTGTATACGATCAGACTCCTTCCGGTCGGAGGGTTCGTCCGCATGGCCGGTGAAGACCCGGAGATGATCGAAGTCAAA
CCCGGTTATACCGTCGGGCTTCTTTTTAATAAAGAGGACGAAGTGGAAAAAGTCATCATTAATCAAAAGGAAAAGTATCC
CGACGCTTTAATTATCGAGGTGGAGACGGCTGATCTTGAGCACGAAATGAAGATTACCGGGTACGAGCAGGGGAAAGAAG
ATGAACTGGCGGGCTTTACTGTCAGTCAGACCTCTTTTTTTATCGTAGACGGAGAAGAAGTGCAGATTGCGCCTTACAAT
CGACAATTCGGGTCTAAACCCGTATGGAAGCGGATTAAGGCGATTGCTGCCGGTCCGATTATGAACTTCATCTTAGCGTA
TGTCATTCTCGTCATGCTCGGATTCATTCAAGGCGTGCCTTCAAATCAGCCTGAGCTCGGGAAGCTGACAGACAATGGAC
GCGCAGCTGCTGCAGGTTTAAAAGAAGGCGACTATATCCAGAGCATTAACGGTGAAAAAATGAGGTCATGGACCGACATC
GTGACAGCGGTAAAAGAAAATCCCGGGAAAAAAATCGATGTCGCCGTCAAACGGGATGGCAAATCGTTTCATATCTCGGT
TACACCTGAAGCTGTAAAAGATGAAAATAAAAAAACAATCGGCCGCTTCGGCTCTTATGCGCCGACTGAAAAAGGCGCGC
TTGCAGCGATTGCTTACGGCGCGACATCTACCGTTGATGTCACAAAAGCGATCCTGACCAATCTGAGCAAACTTGTGACA
GGCCAGTTTAAGCTTGATATGCTTTCGGGTCCTGTCGGCATTTATGATATGACGGATCAAGTTGCAAAAACCGGTATTAT
CAACCTATTCCAGTTTGCGGCGTTTTTAAGCATCAACCTGGGAATCGTCAACCTGCTGCCGATACCGGCGCTTGACGGCG
GACGGCTGCTGTTTTTATTCATAGAAGCAATCCGCGGCAAGCCGATTAACCGTGACAAGGAAGCATTTGTCGTATTTATC
GGCGTAGCTTTCTTAATGCTTCTTATGCTGGTTGTCACATGGAACGATATCCAGCGTTTATTCTTATAA

Domains

Predicted by InterProScan.

PDZ domain (PDZ_6)

(212-258)

Peptidase family M50 (Peptidase_M50)

(8-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMD-9

39.302

100

0.4
  eeP Streptococcus thermophilus LMG 18311

39.437

100

0.398