Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   I3J23_RS00320 Genome accession   NZ_CP065159
Coordinates   51105..51749 (-) Length   214 a.a.
NCBI ID   WP_046559696.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GXU-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 46105..56749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3J23_RS00295 (I3J23_00295) rapC 46124..47260 (+) 1137 WP_207579534.1 Rap family tetratricopeptide repeat protein Regulator
  I3J23_RS00300 (I3J23_00300) - 47250..47432 (+) 183 WP_029974898.1 hypothetical protein -
  I3J23_RS00305 (I3J23_00305) - 47465..48091 (-) 627 Protein_63 DNA polymerase -
  I3J23_RS00310 (I3J23_00310) - 48157..49569 (-) 1413 WP_046559694.1 MBL fold metallo-hydrolase -
  I3J23_RS00315 (I3J23_00315) - 49728..50927 (-) 1200 WP_046559695.1 FAD/NAD(P)-binding oxidoreductase -
  I3J23_RS00320 (I3J23_00320) vraR 51105..51749 (-) 645 WP_046559696.1 response regulator transcription factor Regulator
  I3J23_RS00325 (I3J23_00325) - 51742..52815 (-) 1074 WP_079892056.1 PAS domain-containing sensor histidine kinase -
  I3J23_RS00330 (I3J23_00330) - 53664..53747 (+) 84 WP_082786706.1 putative holin-like toxin -
  I3J23_RS00335 (I3J23_00335) - 54056..54516 (-) 461 Protein_69 YrhA family protein -
  I3J23_RS19660 - 54529..56230 (-) 1702 Protein_70 T7SS effector LXG polymorphic toxin -
  I3J23_RS00350 (I3J23_00350) - 56250..56684 (-) 435 WP_088005500.1 SMI1/KNR4 family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24417.58 Da        Isoelectric Point: 6.6535

>NTDB_id=445730 I3J23_RS00320 WP_046559696.1 51105..51749(-) (vraR) [Bacillus amyloliquefaciens strain GXU-1]
MIRVLLVDDHTMIRKGLRVLLEGYPEIKIVGESHNGNDAILKTRQLKPDVVLMDLSMPTGLDGFTASSEILKLNLPVKII
ILTMYDEEIFVQKAIEVGAYGYILKNSHYELLYKAIVEVSLGKLFYKTSVSQEILSQWMTSESKKISSVLTVREKEIVRL
IVLGYTNKEIANELSISFKTVENHKTNIMQKLELDSKHELIQYAINNNYLDLTL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=445730 I3J23_RS00320 WP_046559696.1 51105..51749(-) (vraR) [Bacillus amyloliquefaciens strain GXU-1]
GTGATTAGGGTATTGTTGGTCGATGACCATACAATGATTCGAAAGGGTCTCCGTGTGCTTTTGGAAGGCTATCCTGAAAT
CAAAATTGTTGGGGAAAGCCATAATGGAAATGATGCGATCCTTAAGACAAGACAGTTGAAACCGGATGTGGTGTTGATGG
ATTTGTCGATGCCAACTGGATTGGATGGATTTACAGCAAGCAGTGAAATCCTTAAATTGAATCTACCGGTTAAAATCATC
ATTTTAACTATGTATGATGAAGAGATATTTGTCCAAAAAGCAATCGAAGTAGGGGCTTATGGATACATTTTAAAGAACAG
CCATTACGAACTGCTTTATAAAGCGATAGTCGAGGTTTCCTTAGGGAAACTCTTTTACAAGACATCTGTATCACAAGAGA
TTCTCTCTCAATGGATGACATCAGAATCTAAAAAGATTTCTTCTGTTTTAACAGTTCGAGAAAAGGAGATTGTTAGATTA
ATAGTACTGGGCTATACAAATAAAGAGATTGCTAATGAGCTATCGATTAGCTTCAAAACCGTGGAAAACCATAAGACGAA
TATTATGCAGAAGTTAGAACTGGATTCGAAACATGAATTGATTCAATATGCGATCAATAACAACTATCTGGATCTTACAT
TGTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.619

98.131

0.369