Detailed information NTG0445729

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: I3J23_RS00295
• Genome accession: NZ_CP065159
• Coordinates: 46124..47260 (+)
• Length: 378 a.a.
• NCBI ID: WP_207579534.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain GXU-1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 41124..52260

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I3J23_RS00270 (I3J23_00270)	-	41129..41557 (+)	429	WP_024085498.1	hypothetical protein	-
I3J23_RS00275 (I3J23_00275)	-	41632..42153 (+)	522	WP_024085499.1	hypothetical protein	-
I3J23_RS19655	-	42411..42783 (+)	373	Protein_56	hypothetical protein	-
I3J23_RS00280 (I3J23_00280)	-	42997..43461 (+)	465	WP_025852481.1	hypothetical protein	-
I3J23_RS19835	-	43973..44101 (-)	129	WP_256078009.1	hypothetical protein	-
I3J23_RS00285 (I3J23_00285)	-	44675..45049 (+)	375	WP_024085504.1	YoqO family protein	-
I3J23_RS00290 (I3J23_00290)	-	45309..45761 (-)	453	WP_024085505.1	hypothetical protein	-
I3J23_RS00295 (I3J23_00295)	rapC	46124..47260 (+)	1137	WP_207579534.1	Rap family tetratricopeptide repeat protein	Regulator
I3J23_RS00300 (I3J23_00300)	-	47250..47432 (+)	183	WP_029974898.1	hypothetical protein	-
I3J23_RS00305 (I3J23_00305)	-	47465..48091 (-)	627	Protein_63	DNA polymerase	-
I3J23_RS00310 (I3J23_00310)	-	48157..49569 (-)	1413	WP_046559694.1	MBL fold metallo-hydrolase	-
I3J23_RS00315 (I3J23_00315)	-	49728..50927 (-)	1200	WP_046559695.1	FAD/NAD(P)-binding oxidoreductase	-
I3J23_RS00320 (I3J23_00320)	vraR	51105..51749 (-)	645	WP_046559696.1	response regulator transcription factor	Regulator

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 44599.09 Da
• Isoelectric Point: 4.7549

>NTDB_id=445729 I3J23_RS00295 WP_207579534.1 46124..47260(+) (rapC) [Bacillus amyloliquefaciens strain GXU-1]
MEQLISSSKVGLKINEWYKYIRLFSVADAEILKGEVEQEIEHMEEDQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPKIS
DLSEEIESKQSDLKGILEYYFNFFHGMYEFEQYEYLKAISFYNRAEKKISIVPDEIERAEFHYKVAEVYYHMKQTHMSMH
HIVQAIETYKAHETYSIRVIQCSFVIGLNYLDMEYPEKAIPHFMNALKQAQEIDMPRLIGSSLYNLGLCSFTTGHMEKAL
EYFKEGVSIYQSNSLHNSSRLLDILLMLAKTHFKLFNTVDGKQVCEQGLMLSKELNDDVLGKMFDFLMGLFVENDKERLF
KILDYLESKAMLSDVEDLATDAAMYYNVNEDHKVATAFYEEVLYARKQIQRGDCLYEI

Nucleotide

• Length: 1137 bp

>NTDB_id=445729 I3J23_RS00295 WP_207579534.1 46124..47260(+) (rapC) [Bacillus amyloliquefaciens strain GXU-1]
TTGGAGCAATTGATCTCTTCTTCAAAGGTTGGCTTAAAAATCAATGAATGGTACAAATACATAAGATTATTCAGTGTTGC
AGATGCAGAAATTCTAAAGGGTGAAGTTGAACAAGAAATAGAGCATATGGAAGAAGATCAAGATTTATTGTTGTACTATT
CGCTCATGTGTTTTCGACATCAATTAATGCTTGATTATCTTGAACCAAAAACCATGAATGAAGAACGACCTAAAATTTCA
GACTTATCAGAAGAGATCGAAAGTAAACAAAGCGATCTAAAAGGAATTCTTGAATATTATTTTAACTTTTTTCATGGGAT
GTATGAATTTGAACAATACGAATATCTTAAAGCAATAAGTTTTTACAACCGAGCTGAAAAGAAGATATCTATTGTCCCCG
ATGAAATAGAGCGAGCTGAATTTCACTACAAAGTTGCTGAAGTGTACTATCACATGAAGCAAACCCACATGTCTATGCAT
CATATTGTTCAAGCAATAGAAACCTACAAAGCACACGAGACATACTCAATAAGAGTAATCCAATGTTCATTCGTCATCGG
TCTGAATTATTTAGACATGGAGTATCCAGAAAAAGCAATACCGCATTTCATGAATGCATTAAAACAAGCACAAGAAATTG
ATATGCCGCGGTTAATAGGTTCTTCTTTGTACAATCTCGGTTTATGCTCATTTACAACAGGACATATGGAGAAGGCATTG
GAGTATTTTAAAGAAGGCGTCTCAATTTATCAAAGTAATTCTCTTCACAATTCTAGCCGACTGCTTGACATACTTCTAAT
GTTGGCAAAAACGCACTTTAAATTATTCAACACGGTTGATGGAAAACAGGTTTGTGAACAAGGTCTTATGCTTTCAAAGG
AGTTGAACGATGACGTATTAGGAAAAATGTTTGATTTTCTTATGGGTTTATTCGTTGAGAATGACAAAGAACGACTTTTT
AAAATCTTAGATTACTTAGAATCAAAAGCTATGCTTTCAGATGTGGAAGACCTAGCGACTGATGCAGCAATGTATTATAA
TGTAAATGAAGACCATAAAGTAGCTACAGCCTTTTATGAGGAAGTGCTTTATGCCCGAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (191-252)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	46.296	100	0.463
rapF	Bacillus subtilis subsp. subtilis str. 168	45.407	100	0.458