Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   H7994_RS23665 Genome accession   NZ_CP065152
Coordinates   4942408..4943145 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O150:H6 strain FEX669     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4937408..4948145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7994_RS23650 (H7994_23645) clpC 4937862..4940435 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  H7994_RS23655 (H7994_23650) yfiH 4940565..4941296 (-) 732 WP_000040144.1 purine nucleoside phosphorylase YfiH -
  H7994_RS23660 (H7994_23655) rluD 4941293..4942273 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H7994_RS23665 (H7994_23660) comL 4942408..4943145 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  H7994_RS23670 (H7994_23665) raiA 4943415..4943756 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  H7994_RS23675 (H7994_23670) pheL 4943860..4943907 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  H7994_RS23680 (H7994_23675) pheA 4944006..4945166 (+) 1161 WP_000200125.1 bifunctional chorismate mutase/prephenate dehydratase -
  H7994_RS23685 (H7994_23680) tyrA 4945209..4946330 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  H7994_RS23690 (H7994_23685) aroF 4946341..4947411 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  H7994_RS23695 (H7994_23690) yfiL 4947621..4947986 (+) 366 WP_000976008.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=445728 H7994_RS23665 WP_000197686.1 4942408..4943145(+) (comL) [Escherichia coli O150:H6 strain FEX669]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=445728 H7994_RS23665 WP_000197686.1 4942408..4943145(+) (comL) [Escherichia coli O150:H6 strain FEX669]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376