Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HPC59_RS01255 Genome accession   NZ_CP053619
Coordinates   276671..277261 (+) Length   196 a.a.
NCBI ID   WP_005709832.1    Uniprot ID   A0A0J6XXP0
Organism   Lacticaseibacillus rhamnosus strain LV108     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 271671..282261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPC59_RS01235 (HPC59_01285) gyrA 272287..274899 (+) 2613 WP_005709828.1 DNA gyrase subunit A -
  HPC59_RS01240 (HPC59_01290) deoC 274973..275677 (-) 705 WP_005709830.1 deoxyribose-phosphate aldolase -
  HPC59_RS01245 (HPC59_01295) ssb 275787..276218 (+) 432 WP_005709831.1 single-stranded DNA-binding protein -
  HPC59_RS01250 (HPC59_01300) rpsF 276345..276641 (+) 297 WP_005685677.1 30S ribosomal protein S6 -
  HPC59_RS01255 (HPC59_01305) ssb 276671..277261 (+) 591 WP_005709832.1 single-stranded DNA-binding protein Machinery gene
  HPC59_RS01260 (HPC59_01310) rpsR 277352..277588 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  HPC59_RS01265 (HPC59_01320) - 277889..278395 (-) 507 WP_005685670.1 type 1 glutamine amidotransferase domain-containing protein -
  HPC59_RS01270 (HPC59_01325) - 278741..280219 (+) 1479 WP_005709833.1 cytochrome ubiquinol oxidase subunit I -
  HPC59_RS01275 (HPC59_01330) cydB 280212..281231 (+) 1020 WP_005709834.1 cytochrome d ubiquinol oxidase subunit II -
  HPC59_RS01280 (HPC59_01335) - 281271..281465 (+) 195 WP_005685667.1 hypothetical protein -
  HPC59_RS01285 (HPC59_01340) - 281544..281969 (-) 426 WP_005709835.1 CPBP family intramembrane metalloprotease -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20932.66 Da        Isoelectric Point: 4.9056

>NTDB_id=445643 HPC59_RS01255 WP_005709832.1 276671..277261(+) (ssb) [Lacticaseibacillus rhamnosus strain LV108]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
NPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=445643 HPC59_RS01255 WP_005709832.1 276671..277261(+) (ssb) [Lacticaseibacillus rhamnosus strain LV108]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGGGAAACCGACTTCATTAATTGTGTGATCT
GGCGTAAGTCGGCGGAGAATTTCGCAAACTTCACCAAGAAAGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTACTGGAATCACGGGC
AACCACCCAACAGCGGCCATCTGAACCTGCTAATCCTGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GTAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AACCCGGCAGCAGGTCAGAACCAAGGTAACAACGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6XXP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.204

100

0.602
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.749

100

0.505