Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   IVB58_RS01120 Genome accession   NZ_CP065051
Coordinates   241339..241974 (-) Length   211 a.a.
NCBI ID   WP_000633798.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2016GDAB1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 236339..246974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IVB58_RS01105 (IVB58_01095) - 237127..238311 (+) 1185 WP_000939107.1 S41 family peptidase -
  IVB58_RS01110 (IVB58_01100) - 238315..239736 (-) 1422 WP_000840556.1 sigma-54 dependent transcriptional regulator -
  IVB58_RS01115 (IVB58_01105) pilS 239760..241328 (-) 1569 WP_001160340.1 ATP-binding protein Regulator
  IVB58_RS01120 (IVB58_01110) letA 241339..241974 (-) 636 WP_000633798.1 response regulator Regulator
  IVB58_RS01125 (IVB58_01115) pbpG 242187..243233 (+) 1047 WP_005140205.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  IVB58_RS01130 (IVB58_01120) thrC 243342..244481 (-) 1140 WP_000063593.1 threonine synthase -
  IVB58_RS01135 (IVB58_01125) - 244537..245838 (-) 1302 WP_000805829.1 homoserine dehydrogenase -
  IVB58_RS01140 (IVB58_01130) - 246082..246897 (-) 816 WP_000011161.1 DsbC family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23161.81 Da        Isoelectric Point: 5.0959

>NTDB_id=445485 IVB58_RS01120 WP_000633798.1 241339..241974(-) (letA) [Acinetobacter baumannii strain 2016GDAB1]
MITVLVVDDHELVRTGICRMLEDHADVEVIGQAESGEEAIAIVRQQHPQVVLLDVNMPGIGGVETTRRLLQTAPETKVIA
VSGLAEEPYPSLLLKAGAKGYITKGAPIAEMVRAINKVMQGGKYFSADIAEQLASSYLSDTQQSPFDSLSEREMQVAMMI
VNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYGLIKP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=445485 IVB58_RS01120 WP_000633798.1 241339..241974(-) (letA) [Acinetobacter baumannii strain 2016GDAB1]
TTGATTACAGTTTTAGTTGTCGATGACCATGAACTGGTACGTACGGGTATTTGCCGTATGTTAGAAGATCATGCCGATGT
TGAGGTAATTGGACAAGCCGAATCGGGCGAAGAAGCAATTGCTATCGTTCGCCAACAACATCCGCAAGTCGTACTGCTGG
ATGTCAATATGCCGGGCATCGGTGGCGTAGAAACAACCCGTCGTTTATTACAGACGGCTCCAGAGACAAAAGTCATTGCT
GTAAGCGGCCTCGCCGAAGAGCCTTACCCATCTTTATTATTAAAAGCCGGTGCAAAAGGCTATATCACTAAAGGCGCGCC
AATTGCCGAAATGGTTCGTGCAATTAATAAGGTCATGCAAGGCGGTAAATATTTTAGTGCAGATATTGCCGAACAACTCG
CGAGCTCATATTTATCCGACACTCAACAATCCCCTTTTGATTCGTTATCAGAACGGGAAATGCAAGTTGCAATGATGATC
GTCAACTGTATTAGTGCCCAAGAAATTGCCGATAAACTTTTTGTAAGTGTGAAAACTGTAAATACTTACCGTTATCGTAT
TTTTGAAAAGTTAGGAATTGATAGCGATGTAAAACTAACACATCTTGCGATTCGTTACGGTTTGATCAAGCCATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

55.714

99.526

0.554
  letA Legionella pneumophila strain ERS1305867

55.714

99.526

0.554