Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HO398_RS20185 Genome accession   NZ_CP053600
Coordinates   4183492..4184028 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain Nico21(DE3)     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4178492..4189028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HO398_RS20165 (HO398_20170) aphA 4178780..4179493 (+) 714 WP_001395166.1 acid phosphatase AphA -
  HO398_RS20170 (HO398_20175) yjbQ 4179604..4180020 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HO398_RS20175 (HO398_20180) yjbR 4180024..4180380 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HO398_RS20180 (HO398_20185) uvrA 4180415..4183237 (-) 2823 WP_000357744.1 excinuclease ABC subunit UvrA -
  HO398_RS20185 (HO398_20190) ssb 4183492..4184028 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HO398_RS20190 (HO398_20195) yjcB 4184127..4184408 (-) 282 WP_001295689.1 YjcB family protein -
  HO398_RS20195 (HO398_20200) pdeC 4184838..4186424 (+) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  HO398_RS20200 (HO398_20205) soxS 4186427..4186750 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HO398_RS20205 (HO398_20210) soxR 4186836..4187300 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=445405 HO398_RS20185 WP_000168305.1 4183492..4184028(+) (ssb) [Escherichia coli strain Nico21(DE3)]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=445405 HO398_RS20185 WP_000168305.1 4183492..4184028(+) (ssb) [Escherichia coli strain Nico21(DE3)]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489