Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   ICC24_RS09965 Genome accession   NZ_CP065029
Coordinates   1941346..1941777 (+) Length   143 a.a.
NCBI ID   WP_003181967.1    Uniprot ID   Q65JE4
Organism   Bacillus licheniformis strain LCDD6     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1936346..1946777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICC24_RS09945 (ICC24_09945) - 1936392..1937312 (+) 921 WP_021837473.1 dipeptidase -
  ICC24_RS09950 (ICC24_09950) tdh 1937437..1938480 (+) 1044 WP_085959523.1 L-threonine 3-dehydrogenase -
  ICC24_RS09955 (ICC24_09955) - 1938496..1939671 (+) 1176 WP_011197984.1 glycine C-acetyltransferase -
  ICC24_RS09960 (ICC24_09960) miaB 1939815..1941344 (+) 1530 WP_003181965.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ICC24_RS09965 (ICC24_09965) ymcA 1941346..1941777 (+) 432 WP_003181967.1 RicAFT regulatory complex protein RicA family protein Regulator
  ICC24_RS09970 (ICC24_09970) cotE 1942020..1942568 (+) 549 WP_003181968.1 outer spore coat protein CotE -
  ICC24_RS09975 (ICC24_09975) hexA 1942679..1945288 (+) 2610 WP_011197985.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16031.27 Da        Isoelectric Point: 5.0583

>NTDB_id=445403 ICC24_RS09965 WP_003181967.1 1941346..1941777(+) (ymcA) [Bacillus licheniformis strain LCDD6]
MTLYTKKEIVAKARELAKMIAETEEVDFFKKAEAQINENAKITGIINQIKALQKQAVNFKHYEKHEALKQTEAKIDALQE
ELDEIPIIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKNSSPSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=445403 ICC24_RS09965 WP_003181967.1 1941346..1941777(+) (ymcA) [Bacillus licheniformis strain LCDD6]
GTGACGCTTTATACGAAAAAAGAGATTGTTGCAAAAGCGCGGGAGCTCGCAAAAATGATTGCAGAAACGGAAGAAGTCGA
CTTTTTCAAAAAAGCGGAGGCACAGATTAATGAGAATGCCAAAATAACGGGCATAATCAACCAAATCAAAGCCCTGCAAA
AGCAAGCCGTCAACTTTAAACATTACGAAAAGCACGAAGCGCTTAAACAAACGGAAGCAAAGATTGACGCGCTTCAGGAA
GAGCTTGACGAGATTCCGATCATTCAAGAGTTCAGAGACTCCCAAATGGAAGTCAACGACCTTCTTCAGCTTGTCGCGCA
TACAATATCAAACCAAGTGACAAACGAGATCATCACATCGACCGGGGGAGACCTGCTGAAAGGCGAGACCGGTTCAAAAG
TGAAAAATTCATCACCGAGCTGTTCTCTATAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65JE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

86.713

100

0.867