Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IPT86_RS17570 Genome accession   NZ_CP064847
Coordinates   3637154..3637891 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 20     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3632154..3642891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPT86_RS17555 (IPT86_17555) clpC 3632608..3635181 (-) 2574 WP_001317994.1 ATP-dependent chaperone ClpB Regulator
  IPT86_RS17560 (IPT86_17560) yfiH 3635311..3636042 (-) 732 WP_000040147.1 purine nucleoside phosphorylase YfiH -
  IPT86_RS17565 (IPT86_17565) rluD 3636039..3637019 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IPT86_RS17570 (IPT86_17570) comL 3637154..3637891 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  IPT86_RS17575 (IPT86_17575) - 3637995..3639341 (+) 1347 WP_000483766.1 IS4-like element IS4 family transposase -
  IPT86_RS17580 (IPT86_17580) raiA 3639602..3639943 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  IPT86_RS17585 (IPT86_17585) pheL 3640047..3640094 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  IPT86_RS17590 (IPT86_17590) pheA 3640193..3641353 (+) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  IPT86_RS17595 (IPT86_17595) tyrA 3641396..3642517 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=445300 IPT86_RS17570 WP_000197686.1 3637154..3637891(+) (comL) [Escherichia coli strain 20]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=445300 IPT86_RS17570 WP_000197686.1 3637154..3637891(+) (comL) [Escherichia coli strain 20]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376