Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HF677_RS15040 Genome accession   NZ_CP053573
Coordinates   3117617..3118231 (-) Length   204 a.a.
NCBI ID   WP_016152483.1    Uniprot ID   R8X084
Organism   Citrobacter sp. TSA-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3112617..3123231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF677_RS15025 (HF677_015065) helD 3112841..3114895 (-) 2055 WP_019076416.1 DNA helicase IV -
  HF677_RS15030 (HF677_015070) - 3115021..3115467 (+) 447 WP_016152485.1 YccF domain-containing protein -
  HF677_RS15035 (HF677_015075) yccS 3115486..3117639 (+) 2154 WP_016152484.1 YccS family putative transporter -
  HF677_RS15040 (HF677_015080) sxy/tfoX 3117617..3118231 (-) 615 WP_016152483.1 TfoX/Sxy family DNA transformation protein Regulator
  HF677_RS15045 (HF677_015085) sulA 3118448..3118957 (+) 510 WP_019076414.1 SOS-induced cell division inhibitor SulA -
  HF677_RS15050 (HF677_015090) ompA 3119315..3120373 (+) 1059 WP_046275731.1 porin OmpA -
  HF677_RS15055 (HF677_015095) matP 3120471..3120923 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  HF677_RS15060 (HF677_015100) - 3121109..3122869 (+) 1761 WP_080858512.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.52 Da        Isoelectric Point: 8.6113

>NTDB_id=445236 HF677_RS15040 WP_016152483.1 3117617..3118231(-) (sxy/tfoX) [Citrobacter sp. TSA-1]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=445236 HF677_RS15040 WP_016152483.1 3117617..3118231(-) (sxy/tfoX) [Citrobacter sp. TSA-1]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTAGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGACGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTGTCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGTTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8X084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681