Detailed information NTG0445226

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: LLDRC3_RS10675
• Genome accession: NZ_CP064835
• Coordinates: 2083377..2084453 (+)
• Length: 358 a.a.
• NCBI ID: WP_010906242.1
• Uniprot ID: Q9CE70
• Organism: Lactococcus lactis subsp. lactis strain DRC3
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2078377..2089453

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLDRC3_RS10650 (LLDRC3_2040)	pgsA	2078537..2079109 (-)	573	WP_004254763.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
LLDRC3_RS10655 (LLDRC3_2041)	-	2079150..2080046 (-)	897	WP_004254758.1	RodZ family helix-turn-helix domain-containing protein	-
LLDRC3_RS10660 (LLDRC3_2042)	yfmH	2080258..2081541 (-)	1284	WP_004254752.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
LLDRC3_RS10665 (LLDRC3_2043)	yfmF	2081531..2082817 (-)	1287	WP_021214872.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
LLDRC3_RS10670 (LLDRC3_2044)	yaaA	2083015..2083377 (+)	363	WP_004254746.1	S4 domain-containing protein YaaA	-
LLDRC3_RS10675 (LLDRC3_2045)	recF	2083377..2084453 (+)	1077	WP_010906242.1	DNA replication/repair protein RecF	Machinery gene
LLDRC3_RS10680 (LLDRC3_2046)	-	2084540..2084908 (-)	369	WP_004254740.1	carboxymuconolactone decarboxylase family protein	-
LLDRC3_RS10685 (LLDRC3_2047)	-	2084986..2085363 (+)	378	WP_010906243.1	MerR family transcriptional regulator	-
LLDRC3_RS10690 (LLDRC3_2048)	-	2085376..2086197 (-)	822	WP_223203825.1	alpha/beta hydrolase	-
LLDRC3_RS10695 (LLDRC3_2049)	galE	2086443..2087423 (-)	981	WP_010906245.1	UDP-glucose 4-epimerase GalE	-

Sequence

Protein

• Length: 358 a.a.
• Molecular weight: 41356.23 Da
• Isoelectric Point: 6.8652

>NTDB_id=445226 LLDRC3_RS10675 WP_010906242.1 2083377..2084453(+) (recF) [Lactococcus lactis subsp. lactis strain DRC3]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
VPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLSRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQEQ

Nucleotide

• Length: 1077 bp

>NTDB_id=445226 LLDRC3_RS10675 WP_010906242.1 2083377..2084453(+) (recF) [Lactococcus lactis subsp. lactis strain DRC3]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCACCCTAATCTCAATAT
TTTTTTAGGACAAAATGCTCAAGGGAAAACAAATATTCTTGAGGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CAAGTCACGACAAAGAGCTCATTTCTTGGTCACAACAAGAAATGAAGGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
GTTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CATTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTAGTCAAAGGTTCTCCAGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCGTTAAAAGAACGG
AATGCTTACTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTATTGATAAACTTGAAGTTCATGCAAAAAAAATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGAGCAGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGCCCTCATCGTGACGATTTACAATTTTTTATCAATGAGATTAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAATTGATTTAATTTTTGAAGAGA
CTGGTGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACTTTTATAACTACAACTACTCTTGATCATCTTAAAAATTTACCTGAAAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAAGAGCAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-353)

3D structure

• AlphaFold DB: Q9CE70

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	55	100	0.553
recF	Bacillus subtilis subsp. subtilis str. 168	45.977	97.207	0.447