Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HPB53_RS01390 Genome accession   NZ_CP053571
Coordinates   313940..314542 (+) Length   200 a.a.
NCBI ID   WP_003641634.1    Uniprot ID   A0A0G9GV16
Organism   Lactiplantibacillus plantarum strain CNEI-KCA4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 308940..319542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPB53_RS01380 (HPB53_01380) gyrA 310421..312982 (+) 2562 WP_171785704.1 DNA gyrase subunit A -
  HPB53_RS01385 (HPB53_01385) rpsF 313604..313903 (+) 300 WP_003637271.1 30S ribosomal protein S6 -
  HPB53_RS01390 (HPB53_01390) ssb 313940..314542 (+) 603 WP_003641634.1 single-stranded DNA-binding protein Machinery gene
  HPB53_RS01395 (HPB53_01395) rpsR 314581..314817 (+) 237 WP_003641635.1 30S ribosomal protein S18 -
  HPB53_RS01400 (HPB53_01400) - 314998..317010 (+) 2013 WP_003643610.1 DHH family phosphoesterase -
  HPB53_RS01405 (HPB53_01405) rplI 317023..317475 (+) 453 WP_003641637.1 50S ribosomal protein L9 -
  HPB53_RS01410 (HPB53_01410) dnaB 317491..318918 (+) 1428 WP_047672431.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21700.07 Da        Isoelectric Point: 4.7453

>NTDB_id=445176 HPB53_RS01390 WP_003641634.1 313940..314542(+) (ssb) [Lactiplantibacillus plantarum strain CNEI-KCA4]
MINRTILVGRLTRDPELRYTNGGAAVATFTIAVNRQFTNQNGEREADFISCVIWRKAAENFANFTHKGSLVGIDGRIQTR
NYENQQGVRVYVTEVVVENFSLLESRAESERHQSANGGSGNNNYNNGNSNYNNNNNGYSNQGQNAAPQQSSANNNNPFGN
GNTGNASSAAPSSSANNNNQADPFANNGDQIDISDDDLPF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=445176 HPB53_RS01390 WP_003641634.1 313940..314542(+) (ssb) [Lactiplantibacillus plantarum strain CNEI-KCA4]
ATGATTAACCGTACAATTCTTGTTGGCCGACTGACAAGAGATCCGGAATTACGTTACACGAATGGTGGTGCCGCCGTCGC
GACGTTCACTATTGCCGTAAACCGTCAATTCACGAATCAAAATGGGGAACGTGAAGCAGATTTCATTAGTTGCGTCATTT
GGCGTAAAGCTGCTGAAAATTTTGCGAACTTTACTCATAAAGGTTCACTTGTTGGTATCGATGGCCGGATTCAAACCCGG
AACTACGAAAACCAACAAGGGGTACGTGTTTACGTTACAGAAGTTGTCGTTGAAAACTTCTCATTATTAGAATCACGGGC
AGAGTCTGAACGTCATCAGTCTGCCAATGGTGGTAGTGGTAATAACAATTACAACAATGGTAATTCGAATTACAACAACA
ATAATAATGGGTATAGTAATCAAGGCCAAAATGCGGCTCCTCAACAATCATCAGCGAATAACAATAACCCATTTGGTAAT
GGTAATACTGGTAATGCTAGCAGTGCGGCACCATCAAGCAGTGCTAACAACAATAATCAGGCTGACCCATTCGCTAATAA
TGGCGATCAAATTGATATCTCGGATGATGATTTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G9GV16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63

100

0.63
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.5

100

0.535