Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HNY42_RS01215 Genome accession   NZ_CP053557
Coordinates   234781..235308 (-) Length   175 a.a.
NCBI ID   WP_012371897.1    Uniprot ID   A0A1S2W9M6
Organism   Exiguobacterium sp. Helios     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 229781..240308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNY42_RS01195 (HNY42_01195) dnaB 230568..231920 (-) 1353 WP_012371893.1 replicative DNA helicase -
  HNY42_RS01200 (HNY42_01200) rplI 231940..232383 (-) 444 WP_012371894.1 50S ribosomal protein L9 -
  HNY42_RS01205 (HNY42_01205) - 232380..234365 (-) 1986 WP_131973580.1 DHH family phosphoesterase -
  HNY42_RS01210 (HNY42_01210) rpsR 234503..234733 (-) 231 WP_012371896.1 30S ribosomal protein S18 -
  HNY42_RS01215 (HNY42_01215) ssb 234781..235308 (-) 528 WP_012371897.1 single-stranded DNA-binding protein Machinery gene
  HNY42_RS01220 (HNY42_01220) rpsF 235332..235619 (-) 288 WP_012371898.1 30S ribosomal protein S6 -
  HNY42_RS01225 (HNY42_01225) ychF 235743..236843 (-) 1101 WP_026827041.1 redox-regulated ATPase YchF -
  HNY42_RS01230 (HNY42_01230) - 237102..237290 (-) 189 WP_012371900.1 DUF951 domain-containing protein -
  HNY42_RS01235 (HNY42_01235) - 237262..238191 (-) 930 WP_131503622.1 mechanosensitive ion channel family protein -
  HNY42_RS01240 (HNY42_01240) yyaC 238367..238993 (+) 627 WP_370528970.1 spore protease YyaC -
  HNY42_RS01245 (HNY42_01245) - 239079..239843 (-) 765 WP_131503623.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18907.48 Da        Isoelectric Point: 4.9713

>NTDB_id=445113 HNY42_RS01215 WP_012371897.1 234781..235308(-) (ssb) [Exiguobacterium sp. Helios]
MINRVVLVGRLTRDPEMRYTQSGIAVTRFTLACDRPFTGQDGKREADFIDCVVWRKQAENVAQYLKKGSLAGVEGRLQIS
SYDDKDGQRRYRAEVVADSVRFLESRNASRSSDSDSYSSNSNTGGNGNAAGWGSQQQQNNSSSPAPASSSSNSGFGADPF
SGGSSIDLSDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=445113 HNY42_RS01215 WP_012371897.1 234781..235308(-) (ssb) [Exiguobacterium sp. Helios]
ATGATTAACCGCGTCGTTTTAGTCGGTCGGTTAACTCGTGACCCTGAAATGCGTTATACGCAGAGCGGGATTGCGGTAAC
GCGATTCACACTCGCTTGTGACCGTCCGTTTACAGGACAAGATGGGAAGCGAGAAGCTGACTTCATCGATTGCGTCGTTT
GGCGCAAGCAGGCAGAGAACGTTGCTCAGTATTTGAAAAAAGGGAGCCTCGCAGGAGTTGAGGGTCGCCTTCAGATTAGT
AGCTATGACGATAAAGATGGTCAACGTCGTTATCGTGCAGAAGTCGTCGCGGATAGTGTTCGATTCCTAGAATCACGCAA
TGCAAGCCGTTCTTCCGATAGTGATAGCTACTCTTCAAATTCAAATACAGGTGGAAACGGAAATGCTGCAGGATGGGGTT
CACAGCAACAGCAGAACAACTCTTCCTCGCCAGCACCCGCTTCATCTTCATCGAATTCGGGCTTCGGCGCTGATCCGTTC
AGCGGCGGCAGTTCGATCGATCTTTCAGACGACGACCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S2W9M6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

52.809

100

0.537
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.648

100

0.537