Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   IIE09_RS02190 Genome accession   NZ_CP064825
Coordinates   471544..472818 (+) Length   424 a.a.
NCBI ID   WP_000130305.1    Uniprot ID   P0A6H2
Organism   Escherichia coli UTI89     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 466544..477818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IIE09_RS02170 yajG 467707..468285 (-) 579 WP_001295326.1 lipoprotein -
  IIE09_RS02175 bolA 468590..468907 (+) 318 WP_000973448.1 transcriptional regulator BolA -
  IIE09_RS02180 tig 469251..470540 (+) 1290 WP_001198385.1 trigger factor -
  IIE09_RS02185 clpP 470795..471418 (+) 624 WP_000122253.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  IIE09_RS02190 clpX 471544..472818 (+) 1275 WP_000130305.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  IIE09_RS02195 lon 473006..475360 (+) 2355 WP_001295325.1 endopeptidase La -
  IIE09_RS02200 hupB 475551..475841 (+) 291 WP_254892905.1 nucleoid-associated protein HU-beta -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 46356.01 Da        Isoelectric Point: 4.9982

>NTDB_id=445084 IIE09_RS02190 WP_000130305.1 471544..472818(+) (clpX) [Escherichia coli UTI89]
MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRNHLDDYVIG
QEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVEN
IIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT
SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEE
ALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDE
SVIDGQSKPLLIYGKPEAQQASGE

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=445084 IIE09_RS02190 WP_000130305.1 471544..472818(+) (clpX) [Escherichia coli UTI89]
ATGACAGATAAACGCAAAGATGGCTCAGGCAAATTGCTGTATTGCTCTTTTTGCGGCAAAAGCCAGCATGAAGTGCGCAA
GCTGATTGCCGGTCCATCCGTGTATATCTGCGACGAATGTGTTGATTTATGTAACGACATCATTCGCGAAGAGATTAAAG
AAGTTGCACCGCATCGTGAACGCAGTGCGCTACCGACGCCGCATGAAATTCGCAACCACCTGGACGATTACGTTATCGGT
CAGGAACAGGCGAAAAAAGTGCTGGCGGTCGCGGTATACAACCACTACAAACGTCTGCGCAACGGAGATACCAGCAATGG
CGTCGAGTTGGGCAAAAGTAACATTCTGCTGATCGGTCCGACCGGTTCCGGTAAAACGCTACTGGCCGAAACGCTGGCGC
GCCTGCTGGACGTTCCGTTCACCATGGCTGACGCAACCACGCTGACCGAAGCCGGTTATGTGGGCGAAGACGTTGAAAAC
ATCATTCAGAAGCTGTTGCAGAAGTGCGATTACGACGTACAGAAAGCGCAGCGCGGGATTGTCTACATCGATGAAATCGA
CAAGATTTCTCGTAAGTCAGACAACCCGTCCATTACCCGAGACGTTTCCGGTGAAGGCGTACAGCAGGCACTGTTGAAAC
TGATCGAAGGTACGGTAGCTGCTGTTCCGCCGCAAGGTGGGCGTAAACATCCGCAGCAGGAATTCTTGCAGGTTGATACC
TCTAAGATCCTGTTTATCTGTGGCGGTGCGTTTGCCGGTCTGGATAAAGTGATTTCCCATCGTGTAGAAACCGGCTCCGG
TATTGGTTTTGGCGCGACGGTAAAAGCGAAGTCCGACAAAGCAAGCGAAGGCGAGCTGCTGGCGCAGGTTGAACCGGAAG
ATCTGATCAAGTTTGGTCTGATCCCTGAGTTCATTGGTCGTCTGCCGGTTGTCGCAACGTTGAATGAACTGAGCGAAGAA
GCTCTGATTCAGATCCTCAAAGAGCCGAAAAACGCCCTGACCAAGCAGTATCAGGCGCTGTTTAATCTGGAAGGCGTGGA
TCTGGAATTCCGTGACGAGGCGCTGGATGCTATCGCTAAGAAAGCGATGGCGCGTAAAACCGGCGCCCGTGGCCTGCGTT
CCATCGTAGAAGCCGCACTGCTCGATACCATGTACGATCTGCCGTCCATGGAAGATGTCGAAAAAGTGGTTATCGACGAG
TCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGTAAGCCGGAAGCGCAACAGGCATCTGGTGAATAA

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(13-50)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(317-395)

AAA domain (Cdc48 subfamily) (AAA_2)

(112-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A6H2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

59.85

94.575

0.566
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.392

96.226

0.533