Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   HOO69_RS20055 Genome accession   NZ_CP053543
Coordinates   715365..716546 (-) Length   393 a.a.
NCBI ID   WP_069668172.1    Uniprot ID   -
Organism   Vibrio europaeus strain NPI-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 710365..721546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HOO69_RS20050 (HOO69_20105) cqsS 713255..715309 (+) 2055 WP_171802951.1 hybrid sensor histidine kinase/response regulator Regulator
  HOO69_RS20055 (HOO69_20110) cqsA 715365..716546 (-) 1182 WP_069668172.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  HOO69_RS20060 (HOO69_20115) - 716756..717727 (-) 972 WP_171802952.1 TDT family transporter -
  HOO69_RS20065 (HOO69_20120) clcA 717845..719245 (-) 1401 WP_171802953.1 H(+)/Cl(-) exchange transporter ClcA -
  HOO69_RS20070 (HOO69_20125) - 719665..720645 (-) 981 WP_171802954.1 GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43701.86 Da        Isoelectric Point: 6.6848

>NTDB_id=445077 HOO69_RS20055 WP_069668172.1 715365..716546(-) (cqsA) [Vibrio europaeus strain NPI-1]
MNMLTTRSRLPEFIDRRINYYVSDLINKKDNGRNLVLGKKPHPGDIILQSNDYLALTHHPKIIDAQVNSLLSKKDTAFMS
NVFLHSDGLDKSVEHHLADYTGFQTCTIAPSGWIANIGLLQTICDSETNVYIDFFAHMSLWEGARIAGANIHPFMHNNAK
HLRRLIKRNGPGVVLIDSIYSTIGTIAPLQELVSLAKELDCAIVVDESHSVGVYGPKGAGLLQELGLTEQVDFMTASLAK
TFAYRAGAVWCNNLTGQVVPYVSFPSIFSSAMMSFELDRIDATLSVIKESDQSRKRLMECSEQVREGLANIGYNIRSESQ
IISLETAEKTNTRKVRDFFEDHGVFGSVFCTPATPDNKNILRLSLNSALTSTDIDNILSVAKKAHENKELYFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=445077 HOO69_RS20055 WP_069668172.1 715365..716546(-) (cqsA) [Vibrio europaeus strain NPI-1]
ATGAATATGTTAACAACGCGATCTCGCCTGCCCGAGTTTATCGACAGACGAATCAACTACTATGTTTCTGACCTAATAAA
TAAAAAAGATAATGGTAGAAACCTAGTTTTAGGTAAGAAGCCGCACCCGGGTGATATCATTTTGCAAAGTAATGATTACC
TTGCGCTGACCCATCACCCTAAAATCATAGACGCTCAAGTTAATTCATTGCTCTCCAAGAAAGACACGGCATTTATGTCT
AATGTGTTTTTACACAGTGATGGACTAGATAAATCCGTTGAGCACCATCTTGCGGATTACACTGGGTTTCAAACTTGTAC
CATTGCCCCATCAGGTTGGATTGCCAACATCGGCCTACTTCAAACCATCTGTGATTCAGAAACCAATGTGTACATCGACT
TCTTTGCGCATATGTCACTTTGGGAAGGGGCTCGCATCGCTGGTGCCAATATCCACCCCTTTATGCATAACAATGCCAAG
CACCTTAGGCGTTTAATCAAACGCAATGGTCCTGGTGTAGTCTTGATCGACTCCATATACAGTACGATTGGTACCATTGC
ACCACTTCAGGAGTTGGTCTCTTTAGCCAAAGAACTAGATTGTGCGATTGTCGTCGATGAGTCTCACTCGGTCGGTGTTT
ACGGCCCTAAAGGCGCCGGATTACTTCAAGAGCTCGGCCTCACTGAACAGGTCGACTTCATGACTGCCAGCCTAGCAAAA
ACATTTGCTTATCGCGCTGGTGCAGTTTGGTGTAATAACTTAACAGGTCAAGTAGTGCCCTACGTCTCCTTTCCTTCCAT
CTTCAGCTCTGCAATGATGTCGTTCGAGCTCGATAGAATTGATGCCACATTAAGTGTCATTAAGGAAAGTGATCAATCCC
GCAAGCGTCTTATGGAATGTTCAGAGCAAGTTCGTGAAGGTCTTGCAAATATTGGCTATAACATTCGTAGCGAATCTCAA
ATCATTAGCTTAGAAACCGCTGAAAAAACCAATACACGTAAGGTAAGAGATTTTTTTGAAGACCATGGCGTATTCGGTTC
TGTTTTCTGTACACCTGCGACGCCGGATAATAAAAACATCTTACGTTTATCTTTAAATAGTGCCTTAACTAGTACTGATA
TTGATAATATTTTATCGGTCGCGAAGAAAGCCCACGAAAATAAGGAACTTTATTTCGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.959

98.219

0.55