Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   HOO69_RS12770 Genome accession   NZ_CP053541
Coordinates   2769337..2771013 (-) Length   558 a.a.
NCBI ID   WP_171802406.1    Uniprot ID   -
Organism   Vibrio europaeus strain NPI-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2764337..2776013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HOO69_RS12750 (HOO69_12790) - 2764991..2765818 (-) 828 WP_171802175.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  HOO69_RS12755 (HOO69_12795) - 2765912..2767432 (-) 1521 WP_171802176.1 AAA family ATPase -
  HOO69_RS12760 (HOO69_12800) aroB 2767525..2768613 (-) 1089 WP_171383619.1 3-dehydroquinate synthase -
  HOO69_RS12765 (HOO69_12805) aroK 2768642..2769160 (-) 519 WP_069667329.1 shikimate kinase AroK -
  HOO69_RS12770 (HOO69_12810) pilQ 2769337..2771013 (-) 1677 WP_171802406.1 type IV pilus secretin PilQ Machinery gene
  HOO69_RS12775 (HOO69_12815) pilP 2771045..2771548 (-) 504 WP_171802177.1 pilus assembly protein PilP Machinery gene
  HOO69_RS12780 (HOO69_12820) pilO 2771538..2772125 (-) 588 WP_171802178.1 type 4a pilus biogenesis protein PilO Machinery gene
  HOO69_RS12785 (HOO69_12825) pilN 2772112..2772675 (-) 564 WP_171802179.1 PilN domain-containing protein Machinery gene
  HOO69_RS12790 (HOO69_12830) pilM 2772665..2773660 (-) 996 WP_069667325.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 558 a.a.        Molecular weight: 61179.77 Da        Isoelectric Point: 4.4473

>NTDB_id=445061 HOO69_RS12770 WP_171802406.1 2769337..2771013(-) (pilQ) [Vibrio europaeus strain NPI-1]
MVALARSCLQWFSLFVVLLPSVVYAHEQNDNLLQGLDFKLDEQRNAQIVLTLSDSRAVVDIQKVAQGLSITLPQTQVTEA
LIKVFDVTEFGTAVRDIEVFRHPDEVELIATINGDFRYHDQLEGTRLQVTVASNSDGQQVDKTSLLDKPGKKLSLNFQDI
PVRNVLQLIADYNDFNLVVSDSVTGNLTLRLEEVSWQKVLDIILQVKGLDKRVEGSIVLVAPKAELDAREQQMLEKTRLK
QQLGELSSEIIQVKFAKAADIADLIDAGGEFSMLSPRGSLSVDERTNALLIRDLEQNVDVIRSIVESLDIPVKQVQIEAR
IVTVNEGNLDELGVRWGFSNTNGSTSIGASIEDNVFDVVPIDDMLNVNLGTTSANASTIAFQVAKLGSDMLLDLELSALQ
RESKAEVISSPRLITTNKKPAYIEQGSEIPYLESSSSGATSVSFKKAVLSLKVTPQITPDNRLILDLSVTQDRPGDVVKT
GTGEAVAINTQRIGTQVLVENGETVVLGGIFQHSVTDAVDKVPFFGDLPLLGALFRRTYQQMGKSELLIFVTPKVVIE

Nucleotide


Download         Length: 1677 bp        

>NTDB_id=445061 HOO69_RS12770 WP_171802406.1 2769337..2771013(-) (pilQ) [Vibrio europaeus strain NPI-1]
ATGGTGGCTTTAGCTAGAAGCTGTTTGCAATGGTTCAGCTTGTTTGTGGTTCTCTTGCCAAGTGTTGTTTATGCCCATGA
GCAAAATGACAACCTCCTGCAAGGCTTGGATTTCAAACTCGATGAACAGCGCAACGCGCAAATTGTTCTAACCTTGTCTG
ACTCTCGTGCTGTGGTTGATATACAAAAAGTGGCGCAGGGGTTAAGTATTACCCTACCTCAAACTCAAGTGACGGAAGCG
TTAATCAAGGTTTTTGATGTGACCGAGTTTGGCACTGCGGTACGTGACATTGAAGTTTTTCGCCATCCTGACGAGGTTGA
GCTGATAGCGACAATTAATGGGGACTTTCGTTATCACGATCAACTTGAAGGGACGCGATTGCAAGTCACCGTGGCGAGCA
ATAGCGATGGTCAGCAGGTGGACAAAACGAGTCTTCTCGATAAGCCAGGCAAAAAGTTATCACTTAATTTTCAAGATATT
CCGGTTAGAAATGTGTTGCAACTGATCGCCGATTACAATGATTTCAACTTGGTTGTTTCCGATTCAGTGACGGGCAATCT
GACCTTACGCCTTGAAGAGGTATCATGGCAGAAGGTGCTAGATATCATCCTTCAGGTCAAAGGGTTAGATAAACGAGTCG
AAGGAAGCATTGTTTTGGTCGCGCCAAAAGCGGAACTGGATGCTCGTGAGCAGCAGATGCTGGAGAAAACGCGTTTAAAG
CAACAGTTAGGGGAACTGTCGTCGGAAATTATCCAAGTTAAGTTTGCCAAGGCGGCCGATATTGCTGACTTAATCGATGC
TGGTGGTGAGTTTAGTATGCTGTCTCCGCGGGGTTCTTTGAGTGTGGACGAGCGCACCAACGCACTGTTGATTCGAGACT
TAGAGCAAAATGTCGATGTTATTCGTTCTATTGTTGAATCACTCGATATTCCCGTTAAGCAGGTGCAAATCGAGGCAAGG
ATTGTCACGGTTAATGAAGGCAACTTGGATGAGCTTGGGGTACGTTGGGGATTTAGTAACACCAATGGCAGTACTTCTAT
TGGCGCCAGCATTGAAGACAATGTATTCGATGTGGTGCCAATCGATGACATGCTAAACGTGAATCTTGGCACAACCTCAG
CTAATGCTTCGACCATTGCATTTCAAGTCGCCAAGCTTGGCTCCGACATGTTGCTTGACCTTGAGCTATCGGCATTACAA
AGAGAGTCGAAAGCAGAAGTCATCTCAAGCCCGCGTTTGATCACCACTAATAAAAAGCCAGCCTATATTGAGCAGGGCAG
CGAGATTCCTTATCTAGAGTCATCTTCAAGCGGGGCAACCAGCGTCTCGTTTAAGAAGGCAGTGCTCAGTTTAAAAGTCA
CGCCACAGATTACCCCAGATAATCGGCTAATTCTGGATTTGAGCGTGACCCAAGATAGGCCAGGTGATGTGGTGAAAACC
GGTACAGGGGAAGCGGTAGCGATTAACACCCAAAGAATCGGTACCCAAGTGCTGGTGGAGAATGGAGAAACCGTGGTTCT
CGGGGGGATTTTTCAACACAGCGTGACAGATGCGGTCGACAAAGTGCCTTTCTTTGGTGATTTGCCTCTGCTAGGGGCGC
TATTTCGTCGTACTTACCAACAAATGGGCAAAAGCGAACTGTTAATTTTCGTCACACCAAAGGTAGTGATTGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(249-314)

Bacterial type II and III secretion system protein (Secretin)

(398-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

66.969

98.746

0.661
  pilQ Vibrio cholerae strain A1552

65.295

100

0.654
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

65.295

100

0.654
  pilQ Pseudomonas aeruginosa PAK

41.133

98.029

0.403
  comQ Acinetobacter baylyi ADP1

39.209

99.642

0.391
  pilQ Legionella pneumophila strain Lp02

40.824

95.699

0.391
  pilQ Legionella pneumophila strain ERS1305867

40.824

95.699

0.391
  pilQ Acinetobacter baumannii D1279779

36.655

100

0.389
  pilQ Acinetobacter baumannii strain A118

36.655

100

0.389