Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   ITP52_RS02550 Genome accession   NZ_CP064818
Coordinates   577995..579020 (-) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain SH1     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 572995..584020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITP52_RS02515 (ITP52_02515) panEA 573480..574376 (-) 897 WP_003232206.1 2-dehydropantoate 2-reductase -
  ITP52_RS02520 (ITP52_02520) ylbP 574536..575018 (+) 483 WP_003244940.1 N-acetyltransferase -
  ITP52_RS02525 (ITP52_02525) gerR 575075..575656 (-) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  ITP52_RS02530 (ITP52_02530) rpmF 575802..575981 (-) 180 WP_003154457.1 50S ribosomal protein L32 -
  ITP52_RS02535 (ITP52_02535) ylbN 576003..576521 (-) 519 WP_014479718.1 DUF177 domain-containing protein -
  ITP52_RS02540 (ITP52_02540) - 576549..576734 (+) 186 WP_003232215.1 hypothetical protein -
  ITP52_RS02545 (ITP52_02545) tmcAL 576731..577978 (+) 1248 WP_041850860.1 nucleotidyltransferase -
  ITP52_RS02550 (ITP52_02550) sepM 577995..579020 (-) 1026 WP_003245451.1 protease DdcP Regulator
  ITP52_RS02555 (ITP52_02555) ylbK 579022..579804 (-) 783 WP_021479345.1 patatin family protein -
  ITP52_RS02560 (ITP52_02560) spoVV 579985..581211 (+) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  ITP52_RS02565 (ITP52_02565) coaD 581222..581707 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ITP52_RS02570 (ITP52_02570) rsmD 581712..582266 (-) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ITP52_RS02575 (ITP52_02575) ylbG 582589..582861 (-) 273 WP_009967171.1 YlbG family protein -
  ITP52_RS02580 (ITP52_02580) ylbF 582916..583365 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ITP52_RS02585 (ITP52_02585) ylbE 583481..583720 (-) 240 WP_003232231.1 YlbE-like family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=444946 ITP52_RS02550 WP_003245451.1 577995..579020(-) (sepM) [Bacillus subtilis strain SH1]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=444946 ITP52_RS02550 WP_003245451.1 577995..579020(-) (sepM) [Bacillus subtilis strain SH1]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTAATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402