Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EYQ96_RS12425 Genome accession   NZ_CP053477
Coordinates   2468884..2470248 (-) Length   454 a.a.
NCBI ID   WP_002465557.1    Uniprot ID   A0A364UNL0
Organism   Staphylococcus warneri strain WB224     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2463884..2475248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYQ96_RS12410 (EYQ96_12455) cysE 2465023..2465652 (-) 630 WP_171001928.1 serine O-acetyltransferase -
  EYQ96_RS12415 (EYQ96_12460) gltX 2466044..2467498 (-) 1455 WP_023374634.1 glutamate--tRNA ligase -
  EYQ96_RS12420 (EYQ96_12465) - 2467784..2468857 (-) 1074 WP_107566297.1 PIN/TRAM domain-containing protein -
  EYQ96_RS12425 (EYQ96_12470) radA 2468884..2470248 (-) 1365 WP_002465557.1 DNA repair protein RadA Machinery gene
  EYQ96_RS12430 (EYQ96_12475) - 2470590..2473043 (-) 2454 WP_002465575.1 ATP-dependent Clp protease ATP-binding subunit -
  EYQ96_RS12435 (EYQ96_12480) - 2473059..2474063 (-) 1005 WP_023374631.1 protein arginine kinase -
  EYQ96_RS12440 (EYQ96_12485) - 2474056..2474613 (-) 558 WP_114599329.1 UvrB/UvrC motif-containing protein -
  EYQ96_RS12445 (EYQ96_12490) - 2474634..2475095 (-) 462 WP_002451197.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49837.32 Da        Isoelectric Point: 6.8989

>NTDB_id=444946 EYQ96_RS12425 WP_002465557.1 2468884..2470248(-) (radA) [Staphylococcus warneri strain WB224]
MAKKKIIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKSKETAGKVQTLDSIKNESTPRVLTESKEFNRV
LGGGIVNGSLVLIGGDPGIGKSTLLLQICASLSQSKNVLYITGEESINQTKLRADRLEEDSSKLQVLAETDLEVIYQTVK
DINPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVLNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDKAVDGLDCFIGEVGLTGEVR
RVARIEQRVQEAAKLGFKRVIIPQTNIGGWTFPEDIKVVGVSSVHEALKYAFNS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=444946 EYQ96_RS12425 WP_002465557.1 2468884..2470248(-) (radA) [Staphylococcus warneri strain WB224]
TTGGCCAAGAAAAAGATAATATTTGAATGTATGGCATGTGGCTATCAATCTCCAAAATGGATGGGGAAGTGTCCTAATTG
TGGTGCATGGAACCAGATGGAAGAAATAGTAGAAAAAGCCGCCAATCCTAAACATGGTGTTAAATCTAAAGAAACAGCAG
GGAAAGTACAAACATTAGATAGTATCAAAAATGAATCTACACCACGTGTTCTTACGGAATCTAAAGAATTTAACCGTGTA
CTTGGTGGAGGAATAGTTAATGGATCATTAGTATTAATAGGCGGGGATCCAGGTATTGGTAAATCCACGTTACTATTACA
AATTTGTGCCTCACTCTCACAATCTAAAAATGTCTTATATATAACAGGTGAGGAATCAATTAATCAAACAAAATTACGTG
CAGATCGTTTGGAAGAAGACTCGAGTAAATTACAAGTATTAGCTGAAACGGATTTAGAAGTCATCTATCAAACAGTTAAA
GACATTAATCCGGACTTACTAGTAGTTGACTCTATTCAAACAATATATCATCCAGAAATTAGCTCTGCACCAGGATCTGT
GTCACAGGTTAGAGAAAGCACGCAAAGCTTAATGAATATAGCTAAACAAATGAACATAGCTACATTTATTGTCGGGCATG
TGACAAAAGAAGGACAAATTGCAGGACCTAGATTACTTGAACACATGGTAGATACTGTATTGTACTTTGAAGGCGATGAA
CACCATGCTTATCGAATACTACGAGCAGTAAAAAACCGTTTTGGTTCGACTAATGAGATGGGAATATTTGAAATGAAACA
AAGTGGTCTTAAAGGTGTGCTAAATCCTTCAGAGATGTTTTTAGAAGAACGTTCAACTAATGTGCCAGGTTCAACAATTG
TTTCAACTATGGAAGGTACAAGACCACTACTTATTGAAGTGCAGGCGCTTGTAACACCGACAACATTTAATAATCCGCGT
CGTATGGCTACCGGTATCGATCATAATCGTTTAAGCTTATTAATGGCTGTTTTAGAGAAAAAAGAAAATTATCTATTACA
ACAACAAGATGCTTATATTAAGGTTGCTGGTGGCGTGAAATTAACTGAACCTGCAGTTGATTTAAGTATCATTGTAGCTA
CAGCTTCAAGCTTTAAAGACAAAGCTGTAGACGGATTAGACTGCTTTATTGGCGAGGTTGGTCTAACAGGAGAAGTAAGA
CGTGTAGCTAGAATAGAACAACGTGTTCAAGAAGCAGCAAAGTTAGGGTTTAAGAGAGTTATTATTCCTCAAACTAATAT
AGGTGGTTGGACTTTCCCGGAAGATATAAAAGTAGTAGGTGTTTCATCAGTACATGAAGCATTAAAATACGCATTTAATT
CATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)

AAA domain (AAA_25)

(69-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A364UNL0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.105

100

0.674
  radA Streptococcus pneumoniae Rx1

60.398

99.559

0.601
  radA Streptococcus pneumoniae D39

60.398

99.559

0.601
  radA Streptococcus pneumoniae R6

60.398

99.559

0.601
  radA Streptococcus pneumoniae TIGR4

60.398

99.559

0.601
  radA Streptococcus mitis NCTC 12261

60.398

99.559

0.601
  radA Streptococcus mitis SK321

60.398

99.559

0.601