Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   ITP52_RS02580 Genome accession   NZ_CP064818
Coordinates   582916..583365 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain SH1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 577916..588365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITP52_RS02550 (ITP52_02550) sepM 577995..579020 (-) 1026 WP_003245451.1 protease DdcP Regulator
  ITP52_RS02555 (ITP52_02555) ylbK 579022..579804 (-) 783 WP_021479345.1 patatin family protein -
  ITP52_RS02560 (ITP52_02560) spoVV 579985..581211 (+) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  ITP52_RS02565 (ITP52_02565) coaD 581222..581707 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ITP52_RS02570 (ITP52_02570) rsmD 581712..582266 (-) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ITP52_RS02575 (ITP52_02575) ylbG 582589..582861 (-) 273 WP_009967171.1 YlbG family protein -
  ITP52_RS02580 (ITP52_02580) ylbF 582916..583365 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ITP52_RS02585 (ITP52_02585) ylbE 583481..583720 (-) 240 WP_003232231.1 YlbE-like family protein -
  ITP52_RS02590 (ITP52_02590) ylbD 583736..584134 (-) 399 WP_003232233.1 YlbD family protein -
  ITP52_RS02595 (ITP52_02595) ylbC 584366..585406 (-) 1041 WP_041850862.1 CAP domain-containing protein -
  ITP52_RS02600 (ITP52_02600) ylbB 585490..585936 (-) 447 WP_003221362.1 CBS domain-containing protein -
  ITP52_RS02605 (ITP52_02605) ylbA 586076..586438 (+) 363 WP_003232238.1 YugN family protein -
  ITP52_RS02610 (ITP52_02610) ctaG 586470..587363 (-) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  ITP52_RS02615 (ITP52_02615) ctaF 587390..587722 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  ITP52_RS02620 (ITP52_02620) ctaE 587725..588348 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=444947 ITP52_RS02580 WP_003221370.1 582916..583365(-) (ylbF) [Bacillus subtilis strain SH1]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=444947 ITP52_RS02580 WP_003221370.1 582916..583365(-) (ylbF) [Bacillus subtilis strain SH1]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1