Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   HLV59_RS17310 Genome accession   NZ_CP053391
Coordinates   3702799..3704382 (+) Length   527 a.a.
NCBI ID   WP_216606742.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate QL-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3697799..3709382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLV59_RS17290 - 3698287..3699588 (+) 1302 WP_171430444.1 homoserine dehydrogenase -
  HLV59_RS17295 thrC 3699643..3700782 (+) 1140 WP_002048893.1 threonine synthase -
  HLV59_RS17300 pbpG 3700894..3701940 (-) 1047 WP_016144106.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  HLV59_RS17305 - 3702153..3702788 (+) 636 WP_002121174.1 response regulator -
  HLV59_RS17310 pilS 3702799..3704382 (+) 1584 WP_216606742.1 PAS domain-containing sensor histidine kinase Regulator
  HLV59_RS17315 pilR 3704407..3705819 (+) 1413 WP_171430445.1 sigma-54 dependent transcriptional regulator Regulator
  HLV59_RS17320 - 3705823..3707007 (-) 1185 WP_031947156.1 S41 family peptidase -
  HLV59_RS17325 gpmI 3707023..3708570 (-) 1548 WP_016144102.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 527 a.a.        Molecular weight: 59625.30 Da        Isoelectric Point: 6.7159

>NTDB_id=444709 HLV59_RS17310 WP_216606742.1 3702799..3704382(+) (pilS) [Acinetobacter lactucae isolate QL-1]
MQFPVNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDTSLQQPALYSYTLLGYSLLSLLQLLCFKFVATQATRQ
LVLFFIVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLVITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYNIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDLEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIELNDFIKTLLDEDLSDVK
HAIQLRSSDLSLKILFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYTNKIYIDVIDYGEGVSKRDISQLFK
PFFSTEINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIACPIIY

Nucleotide


Download         Length: 1584 bp        

>NTDB_id=444709 HLV59_RS17310 WP_216606742.1 3702799..3704382(+) (pilS) [Acinetobacter lactucae isolate QL-1]
ATGCAATTTCCCGTAAACTCATCCTTGTCCCATACGATTTTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACACTAGTCTACAACAACCCGCTTTATATTCTT
ACACACTACTCGGCTATTCGCTCTTAAGCCTTCTTCAACTTTTATGCTTTAAGTTTGTTGCTACTCAGGCAACACGCCAG
CTTGTTTTATTTTTTATAGTTGATGTTATTTGTCTGAGTTTACTTACATTTTCTGTAGGTGAACCAAATCTTCAACTCAG
CTTACTATATGTTATTGCTATATTTACTTCGGCCATTTTACTTAGCGCAAGAATGTCGCTGGTCATTACATTACTTGCAG
TTATTGCGGTTATTTACCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAACAGCGCCTTA
TTGGCTTTCTTGTTTTTCGTGGTACACGGCATCGGACAAATTGCGGTCCAGCGCTTTAAGTTACTTGAGGCACTGACTTT
CCACCAATCAATAGAACTCTATCAATTACAAAATATTAACCGCTATATTTTGGAACAAATTGAAGAGGGCTATTTAGTTC
TAGATGAAAACTACAACATTGTTTTAAGCAACCCAGCAGCATGTTCACTTTTAGGGATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCTAAATGGCATGCTGACTTATTTGAAATTCTTAAGTTTGATAACCTAAAAGAAGGTGACCGATTTAT
TTTTGAGTCTCGGCTTTCGGCCTACTCTATTAATATTAAAGTGCAGCATCTTTTAGTACCACAACAAGCGTTGACACTAC
TCATTTTACAAGATGCGCAGCAAATTAATCAGCAAGCTCAACAACTCAAACTTGCCGCTTTAGGGCAACTCTCAGCAAGT
ATTGCCCATGAAATCCGTAATCCTCTTGCAGCGATTGTGCAAGCAAATGAACTACTTAAAGACAGTGATTTAGAACAACA
AAATACTTTACGCAATATGATTGGCAAGCAAACCAAACGCATTGATAGTATTGTTCAAGACACGTTAGGGCTTGCCCGTA
GTGAAAGAACATATCCAATCCAGATTGAATTAAACGACTTCATAAAAACGTTATTAGATGAAGATTTATCTGATGTTAAA
CATGCGATCCAGCTTAGAAGCTCTGATTTATCTTTAAAGATATTGTTTGATGAAAAGCAGCTCAGACAAGTGCTGATTAA
CCTAGTTAGAAATGCTTTACGACACAATGCACCCGACTCGCCCTATGTTCTGATCAATATTCATTCACAAACAAATAAAA
TCTATACAAATAAAATCTATATTGATGTGATCGATTACGGTGAAGGGGTTTCAAAACGTGATATATCTCAATTATTTAAA
CCATTTTTTAGTACCGAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAA
GCTCACTTATGTAGAGCAAAAACAAGGGGCATGCTTCCGAATAGCGTGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-250)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

92.6

100

0.926