Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HLV59_RS02020 Genome accession   NZ_CP053391
Coordinates   425345..425974 (-) Length   209 a.a.
NCBI ID   WP_057105668.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate QL-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 420345..430974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLV59_RS01985 mlaE 420671..421447 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  HLV59_RS01990 - 421447..422130 (+) 684 WP_125697968.1 outer membrane lipid asymmetry maintenance protein MlaD -
  HLV59_RS01995 - 422161..422802 (+) 642 WP_002116826.1 phospholipid-binding protein MlaC -
  HLV59_RS02000 - 422814..423101 (+) 288 WP_016143579.1 lipid asymmetry maintenance protein MlaB -
  HLV59_RS02005 - 423174..424187 (-) 1014 WP_016143578.1 magnesium and cobalt transport protein CorA -
  HLV59_RS02010 - 424346..424927 (+) 582 WP_057105670.1 TIGR00730 family Rossman fold protein -
  HLV59_RS02015 - 424942..425343 (+) 402 WP_057105669.1 NUDIX domain-containing protein -
  HLV59_RS02020 comF 425345..425974 (-) 630 WP_057105668.1 ComF family protein Machinery gene
  HLV59_RS02025 recG 425967..428012 (-) 2046 WP_062850174.1 ATP-dependent DNA helicase RecG -
  HLV59_RS02030 - 428033..428848 (+) 816 WP_171429238.1 SDR family NAD(P)-dependent oxidoreductase -
  HLV59_RS02035 - 428928..429911 (+) 984 WP_171429239.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24477.70 Da        Isoelectric Point: 9.9656

>NTDB_id=444683 HLV59_RS02020 WP_057105668.1 425345..425974(-) (comF) [Acinetobacter lactucae isolate QL-1]
MFSFLNFQHLIQLFSPCSLCELGMREKYSLCKDCWEQLPWLKQTIQRNNLSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSRHLKIPVWQPIQRLNEHSQKGLTRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=444683 HLV59_RS02020 WP_057105668.1 425345..425974(-) (comF) [Acinetobacter lactucae isolate QL-1]
ATGTTTAGTTTTTTAAACTTCCAACATCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCATGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACAATTCAACGTAATAATCTATCTGTTCTTG
TGGCCTGTAATTATGCTTATCCAGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTATCAAATCTTA
TTAGGGGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCGATCGTACCTATGCCCATTTCCAATCAACGTTTAAT
CGAGCGTGGTTTCAATCAGTCATTACTACTTGCCAATATCTTAAGCAGACACTTAAAAATACCTGTTTGGCAACCAATTC
AACGCTTAAATGAGCACTCTCAAAAAGGGCTTACTCGACTAGAACGCTTTGAAAATATAGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACTACAGGAAGCTCTGTTCATGCGCTCAG
TCAGGCACTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCAGCAACGCCGAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.254

100

0.833
  comF Acinetobacter baumannii D1279779

82.297

100

0.823