Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IVL01_RS13265 Genome accession   NZ_CP064680
Coordinates   2729503..2730240 (+) Length   245 a.a.
NCBI ID   WP_021578968.1    Uniprot ID   -
Organism   Escherichia coli K-12 strain CETR1G40     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2724503..2735240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IVL01_RS13250 (IVL01_13250) clpC 2724957..2727530 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  IVL01_RS13255 (IVL01_13255) yfiH 2727660..2728391 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  IVL01_RS13260 (IVL01_13260) rluD 2728388..2729368 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IVL01_RS13265 (IVL01_13265) comL 2729503..2730240 (+) 738 WP_021578968.1 outer membrane protein assembly factor BamD Machinery gene
  IVL01_RS13270 (IVL01_13270) raiA 2730511..2730852 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  IVL01_RS13275 (IVL01_13275) pheL 2730956..2731003 (+) 48 WP_010723158.1 phe operon leader peptide -
  IVL01_RS13280 (IVL01_13280) pheA 2731102..2732262 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  IVL01_RS13285 (IVL01_13285) tyrA 2732305..2733426 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  IVL01_RS13290 (IVL01_13290) aroF 2733437..2734507 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  IVL01_RS13295 (IVL01_13295) yfiL 2734717..2735082 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27843.47 Da        Isoelectric Point: 7.1587

>NTDB_id=444632 IVL01_RS13265 WP_021578968.1 2729503..2730240(+) (comL) [Escherichia coli K-12 strain CETR1G40]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDKRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=444632 IVL01_RS13265 WP_021578968.1 2729503..2730240(+) (comL) [Escherichia coli K-12 strain CETR1G40]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAAGCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376