Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   O3M_RS25220 Genome accession   NC_018650
Coordinates   5005799..5006824 (+) Length   341 a.a.
NCBI ID   WP_000644897.1    Uniprot ID   B7LA31
Organism   Escherichia coli O104:H4 str. 2009EL-2050     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5000799..5011824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O3M_RS25210 (O3M_24105) rpmE 5003030..5003242 (-) 213 WP_000710769.1 50S ribosomal protein L31 -
  O3M_RS25215 (O3M_24110) priA 5003445..5005643 (+) 2199 WP_001350069.1 primosomal protein N' Machinery gene
  O3M_RS25220 (O3M_24115) cytR 5005799..5006824 (+) 1026 WP_000644897.1 DNA-binding transcriptional regulator CytR Regulator
  O3M_RS25225 (O3M_24120) ftsN 5006916..5007875 (+) 960 WP_000068834.1 cell division protein FtsN -
  O3M_RS25230 (O3M_24125) hslV 5007968..5008498 (+) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  O3M_RS25235 (O3M_24130) hslU 5008508..5009839 (+) 1332 WP_001293343.1 HslU--HslV peptidase ATPase subunit -
  O3M_RS25240 (O3M_24135) menA 5009906..5010832 (+) 927 WP_001307494.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  O3M_RS25245 (O3M_24140) rraA 5010925..5011410 (+) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  O3M_RS25250 (O3M_24145) zapB 5011495..5011740 (-) 246 WP_001296623.1 septal ring assembly protein ZapB -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37800.74 Da        Isoelectric Point: 6.3001

>NTDB_id=44452 O3M_RS25220 WP_000644897.1 5005799..5006824(+) (cytR) [Escherichia coli O104:H4 str. 2009EL-2050]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALHRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=44452 O3M_RS25220 WP_000644897.1 5005799..5006824(+) (cytR) [Escherichia coli O104:H4 str. 2009EL-2050]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCATCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7LA31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

63.881

98.24

0.628
  cytR Vibrio cholerae C6706

65.138

95.894

0.625

Multiple sequence alignment