Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   HNO12_RS11935 Genome accession   NZ_CP053376
Coordinates   2510912..2511982 (-) Length   356 a.a.
NCBI ID   WP_003153083.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain WF02     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2505912..2516982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNO12_RS11885 (HNO12_11920) sipW 2505971..2506555 (-) 585 WP_003153100.1 signal peptidase I SipW -
  HNO12_RS11890 (HNO12_11925) tapA 2506527..2507198 (-) 672 WP_024085598.1 amyloid fiber anchoring/assembly protein TapA -
  HNO12_RS11895 (HNO12_11930) - 2507458..2507787 (+) 330 WP_024085599.1 DUF3889 domain-containing protein -
  HNO12_RS11900 (HNO12_11935) - 2507827..2508006 (-) 180 WP_003153093.1 YqzE family protein -
  HNO12_RS11905 (HNO12_11940) comGG 2508063..2508440 (-) 378 WP_003153092.1 competence type IV pilus minor pilin ComGG Machinery gene
  HNO12_RS11910 (HNO12_11945) comGF 2508441..2508941 (-) 501 WP_223203779.1 competence type IV pilus minor pilin ComGF -
  HNO12_RS11915 (HNO12_11950) comGE 2508850..2509164 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  HNO12_RS11920 (HNO12_11955) comGD 2509148..2509585 (-) 438 WP_024085600.1 competence type IV pilus minor pilin ComGD Machinery gene
  HNO12_RS11925 (HNO12_11960) comGC 2509575..2509841 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  HNO12_RS11930 (HNO12_11965) comGB 2509888..2510925 (-) 1038 WP_024085602.1 competence type IV pilus assembly protein ComGB Machinery gene
  HNO12_RS11935 (HNO12_11970) comGA 2510912..2511982 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  HNO12_RS11940 (HNO12_11975) - 2512174..2513124 (-) 951 WP_014305415.1 magnesium transporter CorA family protein -
  HNO12_RS11945 (HNO12_11980) - 2513270..2514571 (+) 1302 WP_014305416.1 hemolysin family protein -
  HNO12_RS11950 (HNO12_11985) - 2514609..2515439 (-) 831 WP_003153080.1 STAS domain-containing protein -
  HNO12_RS11960 (HNO12_11995) - 2515645..2516025 (-) 381 WP_003153079.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  HNO12_RS11965 (HNO12_12000) - 2516262..2516507 (+) 246 WP_003153078.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40529.85 Da        Isoelectric Point: 9.4729

>NTDB_id=444478 HNO12_RS11935 WP_003153083.1 2510912..2511982(-) (comGA) [Bacillus amyloliquefaciens strain WF02]
MKNIETYSRNIINEAYTARASDIHIVPREKDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=444478 HNO12_RS11935 WP_003153083.1 2510912..2511982(-) (comGA) [Bacillus amyloliquefaciens strain WF02]
GTGAAAAATATTGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAAGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTCAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACGGAAACCGTTCATTTGAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAACTGTCCTTATTTCGGGGGGCGGGCGCCGCACTATTGTCCTTTCTGA
AGCATTCACACGGCCTGCTTCTGTTTACCGGCCCGACCGGCTCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAACGGCATTTCAACCGGCGGATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGTTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATCTTAG
GGGAAATCAGAGATGCCGAAACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTTGGGGTGAACATGACAGAAATTGAACAAACCGTCATTGC
CATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACCCGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACAACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

82.022

100

0.82
  pilB Glaesserella parasuis strain SC1401

38.793

97.753

0.379
  pilF Thermus thermophilus HB27

37.892

98.596

0.374