Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CK401_RS08195 Genome accession   NZ_CP053337
Coordinates   1751267..1751848 (-) Length   193 a.a.
NCBI ID   WP_003646183.1    Uniprot ID   A0AAD0X6R2
Organism   Lactiplantibacillus paraplantarum strain CK401     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1746267..1756848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK401_RS08175 (CK401_01659) dnaB 1746902..1748329 (-) 1428 WP_021730339.1 replicative DNA helicase -
  CK401_RS08180 (CK401_01660) rplI 1748345..1748797 (-) 453 WP_021730338.1 50S ribosomal protein L9 -
  CK401_RS08185 (CK401_01661) - 1748809..1750821 (-) 2013 WP_021730337.1 DHH family phosphoesterase -
  CK401_RS08190 (CK401_01662) rpsR 1750992..1751228 (-) 237 WP_021730336.1 30S ribosomal protein S18 -
  CK401_RS08195 (CK401_01663) ssb 1751267..1751848 (-) 582 WP_003646183.1 single-stranded DNA-binding protein Machinery gene
  CK401_RS08200 (CK401_01664) rpsF 1751885..1752184 (-) 300 WP_003637271.1 30S ribosomal protein S6 -
  CK401_RS08205 (CK401_01665) gyrA 1752602..1755184 (-) 2583 WP_021730335.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20936.35 Da        Isoelectric Point: 4.7453

>NTDB_id=444137 CK401_RS08195 WP_003646183.1 1751267..1751848(-) (ssb) [Lactiplantibacillus paraplantarum strain CK401]
MINRTILVGRLTRDPELRYTNGGAAVATFTIAVNRQFTNQNGEREADFISCVIWRKAAENFANFTHKGSLVGIDGRIQTR
NYENQQGVRVYVTEVVVENFSLLESRAESERHQSANGGSGNNNYNNNNNGYSNQGQNAAPQQSSANNNNPFGNGNTGNAS
SAAPSSSANNNNQADPFANNGDQIDISDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=444137 CK401_RS08195 WP_003646183.1 1751267..1751848(-) (ssb) [Lactiplantibacillus paraplantarum strain CK401]
ATGATTAACCGTACAATTCTTGTTGGCCGACTAACAAGAGATCCGGAATTACGTTACACGAATGGTGGTGCCGCCGTCGC
GACGTTCACTATTGCCGTAAACCGTCAATTCACGAATCAAAATGGGGAACGTGAAGCAGACTTCATCAGCTGTGTCATTT
GGCGTAAAGCTGCTGAAAACTTTGCTAACTTTACTCATAAAGGTTCACTTGTTGGTATCGATGGTCGGATTCAAACCCGA
AACTACGAAAATCAACAAGGGGTACGAGTTTACGTTACAGAAGTTGTCGTTGAAAACTTCTCATTATTAGAATCACGGGC
AGAGTCTGAACGTCATCAGTCTGCTAATGGTGGTAGTGGTAATAACAATTACAACAACAATAATAATGGGTATAGTAATC
AAGGCCAAAATGCGGCTCCTCAACAATCATCAGCGAATAACAATAACCCATTTGGTAATGGTAATACTGGTAATGCTAGT
AGTGCGGCACCATCAAGCAGTGCTAACAACAATAACCAGGCGGATCCATTCGCAAATAATGGCGATCAAATTGATATCTC
GGATGATGATTTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

64.767

100

0.648
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.404

100

0.544