Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HHJ54_RS16920 Genome accession   NZ_CP053245
Coordinates   3621189..3621818 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain SCU-485     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3616189..3626818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ54_RS16900 (HHJ54_16900) ycbZ 3616589..3618349 (-) 1761 WP_000156498.1 Lon protease family protein -
  HHJ54_RS16905 (HHJ54_16905) matP 3618535..3618987 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  HHJ54_RS16910 (HHJ54_16910) ompA 3619065..3620105 (-) 1041 WP_001441917.1 porin OmpA -
  HHJ54_RS16915 (HHJ54_16915) sulA 3620461..3620970 (-) 510 WP_000288694.1 SOS-induced cell division inhibitor SulA -
  HHJ54_RS16920 (HHJ54_16920) sxy/tfoX 3621189..3621818 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HHJ54_RS16925 (HHJ54_16925) yccS 3621781..3623943 (-) 2163 WP_000875041.1 YccS family putative transporter -
  HHJ54_RS16930 (HHJ54_16930) yccF 3623953..3624399 (-) 447 WP_001261236.1 YccF domain-containing protein -
  HHJ54_RS16935 (HHJ54_16935) helD 3624522..3626576 (+) 2055 WP_001580558.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=443710 HHJ54_RS16920 WP_000839136.1 3621189..3621818(+) (sxy/tfoX) [Escherichia coli strain SCU-485]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=443710 HHJ54_RS16920 WP_000839136.1 3621189..3621818(+) (sxy/tfoX) [Escherichia coli strain SCU-485]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99