Detailed information NTG0443606

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HLG77_RS19015
• Genome accession: NZ_CP053218
• Coordinates: 3315014..3315874 (+)
• Length: 286 a.a.
• NCBI ID: WP_002061654.1
• Uniprot ID: N9KL48
• Organism: Acinetobacter baumannii strain DT01139C
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3310014..3320874

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HLG77_RS15980 (HLG77_15990)	secG	3310619..3310948 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
HLG77_RS15985 (HLG77_15995)	tpiA	3310961..3311755 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
HLG77_RS15990 (HLG77_16000)	pilB	3312046..3313758 (+)	1713	WP_002058663.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HLG77_RS15995 (HLG77_16005)	pilC	3313788..3315014 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
HLG77_RS19015 (HLG77_16010)	pilD	3315014..3315874 (+)	861	WP_002061654.1	prepilin peptidase	Machinery gene
HLG77_RS16005 (HLG77_16015)	coaE	3315876..3316472 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
HLG77_RS16010 (HLG77_16020)	-	3316469..3317383 (-)	915	WP_000075011.1	DMT family transporter	-
HLG77_RS16015 (HLG77_16025)	rlmB	3317419..3318168 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
HLG77_RS16020 (HLG77_16030)	-	3318270..3318596 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
HLG77_RS16025 (HLG77_16035)	-	3318673..3319983 (-)	1311	WP_004842687.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32083.45 Da
• Isoelectric Point: 7.1041

>NTDB_id=443606 HLG77_RS19015 WP_002061654.1 3315014..3315874(+) (pilD) [Acinetobacter baumannii strain DT01139C]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHERLTLNKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMAFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=443606 HLG77_RS19015 WP_002061654.1 3315014..3315874(+) (pilD) [Acinetobacter baumannii strain DT01139C]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCGATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGCGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCACTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

3D structure

• AlphaFold DB: N9KL48

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	99.65	100	0.997
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441