NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	HLG77_RS10255	Genome accession	NZ_CP053218
Coordinates	2119234..2119935 (-)	Length	233 a.a.
NCBI ID	WP_000594587.1	Uniprot ID	-
Organism	Acinetobacter baumannii strain DT01139C
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2114234..2124935

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HLG77_RS10225 (HLG77_10230)	-	2114541..2114984 (-)	444	WP_001246675.1	SRPBCC family protein	-
HLG77_RS10230 (HLG77_10235)	tadA	2115054..2115557 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
HLG77_RS10235 (HLG77_10240)	-	2115564..2116688 (-)	1125	WP_086384405.1	enoyl-CoA hydratase/isomerase family protein	-
HLG77_RS10240 (HLG77_10245)	ung	2116685..2117398 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
HLG77_RS10245 (HLG77_10250)	-	2117449..2118045 (-)	597	WP_000908453.1	6-pyruvoyl trahydropterin synthase family protein	-
HLG77_RS10250 (HLG77_10255)	gspK	2118275..2119234 (-)	960	WP_000301463.1	type II secretion system minor pseudopilin GspK	-
HLG77_RS10255 (HLG77_10260)	xcpW	2119234..2119935 (-)	702	WP_000594587.1	type II secretion system minor pseudopilin GspJ	Machinery gene
HLG77_RS10260 (HLG77_10265)	xcpV	2119935..2120315 (-)	381	WP_000836906.1	type II secretion system minor pseudopilin GspI	Machinery gene
HLG77_RS10265 (HLG77_10270)	-	2120305..2120859 (-)	555	WP_000841378.1	type II secretion system protein	-
HLG77_RS10270 (HLG77_10275)	-	2120869..2121477 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
HLG77_RS10275 (HLG77_10280)	-	2121515..2122288 (-)	774	WP_000497295.1	TatD family hydrolase	-
HLG77_RS10280 (HLG77_10285)	-	2122306..2122647 (-)	342	WP_001183025.1	PilZ domain-containing protein	-
HLG77_RS10285 (HLG77_10290)	-	2122659..2123639 (-)	981	WP_001075420.1	DNA polymerase III subunit delta'	-
HLG77_RS10290 (HLG77_10295)	kdsB	2123651..2124412 (-)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26681.66 Da Isoelectric Point: 9.3468

                                >NTDB_id=443582 HLG77_RS10255 WP_000594587.1 2119234..2119935(-) (xcpW) [Acinetobacter baumannii strain DT01139C]

MIKNKYIHIRSIASRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS

STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQDDLSLSQEGNS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=443582 HLG77_RS10255 WP_000594587.1 2119234..2119935(-) (xcpW) [Acinetobacter baumannii strain DT01139C]

ATGATAAAAAATAAATATATTCACATCCGAAGCATTGCTTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG

CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT

TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA

TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG

AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA

TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT

ATGAATGGATTTATAGCTTAAATCAGGATGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991

Detailed information NTG0443582