Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   A964_RS06480 Genome accession   NC_018646
Coordinates   1289277..1289717 (-) Length   146 a.a.
NCBI ID   WP_000431168.1    Uniprot ID   R4Z9I5
Organism   Streptococcus agalactiae GD201008-001     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1284277..1294717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A964_RS06465 (A964_1243) - 1284935..1285561 (-) 627 WP_000449636.1 GTP pyrophosphokinase -
  A964_RS06470 (A964_1244) rcrQ 1285669..1287423 (-) 1755 WP_000851085.1 ABC transporter ATP-binding protein Regulator
  A964_RS06475 (A964_1245) rcrP 1287413..1289230 (-) 1818 WP_000481819.1 ABC transporter ATP-binding protein Regulator
  A964_RS06480 (A964_1246) rcrR 1289277..1289717 (-) 441 WP_000431168.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  A964_RS06485 (A964_1247) - 1289986..1292058 (+) 2073 WP_000726930.1 surface-anchored 5'-nucleotidase -
  A964_RS06490 (A964_1248) - 1292095..1292505 (-) 411 WP_000594935.1 peptide deformylase -
  A964_RS06495 (A964_1249) gdhA 1292575..1293924 (-) 1350 WP_000200435.1 NADP-specific glutamate dehydrogenase -
  A964_RS06500 (A964_1250) - 1294092..1294601 (+) 510 WP_000870956.1 HdeD family acid-resistance protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16968.84 Da        Isoelectric Point: 9.8384

>NTDB_id=44343 A964_RS06480 WP_000431168.1 1289277..1289717(-) (rcrR) [Streptococcus agalactiae GD201008-001]
MENPLQKARILVNQLEKYLDRYAKEYDVEHLAGPQGHLVMHLYKHPDKDMSIKDAEEILHISKSVASNLVKRMEKNGFIA
IVPSKTDKRVKYLYLTHLGKQKATQFEIFLEKLHSTMLAGITKEEIRTTKKVIRTLAKNMAMEDFD

Nucleotide


Download         Length: 441 bp        

>NTDB_id=44343 A964_RS06480 WP_000431168.1 1289277..1289717(-) (rcrR) [Streptococcus agalactiae GD201008-001]
ATGGAGAATCCTCTTCAAAAAGCACGAATACTTGTTAATCAACTTGAAAAGTATTTAGATCGTTATGCAAAAGAGTATGA
TGTTGAACATTTAGCGGGTCCACAAGGACACTTAGTGATGCATCTCTATAAACATCCTGACAAGGATATGTCTATAAAAG
ATGCTGAAGAAATTTTACACATCTCTAAGTCTGTAGCTTCTAATTTGGTAAAACGGATGGAAAAAAATGGATTTATTGCG
ATTGTTCCATCTAAGACAGATAAGCGTGTGAAATACCTTTATTTGACTCATCTAGGTAAACAAAAGGCTACACAATTTGA
AATTTTCTTAGAAAAATTGCACAGTACCATGTTAGCAGGTATTACTAAAGAAGAGATACGTACTACCAAAAAGGTTATTA
GAACATTAGCTAAAAATATGGCGATGGAAGATTTTGATTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 7DVS

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

95.89

0.411