Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   SYNGTI_RS11120 Genome accession   NC_017038
Coordinates   2390448..2391122 (+) Length   224 a.a.
NCBI ID   WP_010873338.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803 substr. GT-I     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2385448..2396122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNGTI_RS17300 - 2386586..2386750 (+) 165 WP_158299078.1 hypothetical protein -
  SYNGTI_RS11100 (SYNGTI_2141) - 2386781..2387200 (-) 420 WP_010873334.1 hypothetical protein -
  SYNGTI_RS11105 (SYNGTI_2142) - 2387200..2387619 (-) 420 WP_010873335.1 hypothetical protein -
  SYNGTI_RS11110 (SYNGTI_2143) - 2387968..2389173 (+) 1206 WP_041425833.1 SGNH/GDSL hydrolase family protein -
  SYNGTI_RS11115 (SYNGTI_2144) - 2389266..2390426 (+) 1161 WP_010873337.1 cysteine desulfurase family protein -
  SYNGTI_RS11120 (SYNGTI_2145) comF 2390448..2391122 (+) 675 WP_010873338.1 ComF family protein Machinery gene
  SYNGTI_RS11125 (SYNGTI_2146) - 2391212..2391826 (+) 615 WP_010873339.1 L,D-transpeptidase -
  SYNGTI_RS11130 (SYNGTI_2147) - 2391951..2392271 (+) 321 WP_010873340.1 DUF433 domain-containing protein -
  SYNGTI_RS11135 (SYNGTI_2148) - 2392255..2392590 (+) 336 WP_010873341.1 DUF5615 family PIN-like protein -
  SYNGTI_RS11140 (SYNGTI_2149) bchB 2392822..2394348 (+) 1527 WP_010873342.1 ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit B -
  SYNGTI_RS11145 (SYNGTI_2150) - 2394480..2395160 (+) 681 WP_010873343.1 TrkA family potassium uptake protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25620.62 Da        Isoelectric Point: 10.8654

>NTDB_id=44342 SYNGTI_RS11120 WP_010873338.1 2390448..2391122(+) (comF) [Synechocystis sp. PCC 6803 substr. GT-I]
MWQSIRSLIFQTPCPLCQKPSQDQLCRDCTGQILSHRFPRKFQQWQGNFPRFVWGQYEGQLRRALTVMKFEQQPDIGIWL
GEQLAEQWLQQPQAKTKLRPQVVPIPLNARKQAQRGFNQAERIAAGFCRLTGYVLHPQALQRVKDTQALFGLSPGDRRRE
LQSALATGPGFNTRRPWLILDDIITTGTTALEARRIMEEKGAKVLGIVAIAAPSFSQPMELRQQ

Nucleotide


Download         Length: 675 bp        

>NTDB_id=44342 SYNGTI_RS11120 WP_010873338.1 2390448..2391122(+) (comF) [Synechocystis sp. PCC 6803 substr. GT-I]
ATGTGGCAATCAATTCGTTCCCTCATTTTTCAAACTCCCTGTCCTCTATGCCAAAAACCCAGTCAGGATCAACTTTGTCG
GGATTGCACTGGACAAATTTTGAGCCATCGTTTTCCTCGTAAATTCCAGCAATGGCAAGGAAACTTTCCCCGCTTTGTTT
GGGGACAATACGAAGGACAATTGCGGCGGGCTTTAACGGTGATGAAGTTTGAGCAACAGCCAGACATTGGCATTTGGTTG
GGGGAACAGTTGGCAGAACAGTGGTTACAACAACCCCAAGCTAAAACTAAATTGCGTCCCCAGGTGGTGCCCATTCCCCT
AAACGCTCGTAAGCAAGCCCAACGGGGATTTAATCAAGCTGAAAGAATTGCCGCTGGTTTTTGCCGCCTGACTGGTTATG
TTCTCCACCCCCAAGCATTACAACGAGTTAAAGATACCCAAGCTCTGTTTGGTCTTAGCCCAGGCGATCGCCGCCGGGAA
TTGCAATCAGCTTTAGCCACGGGGCCAGGGTTTAACACTCGCCGACCCTGGTTGATTTTGGATGATATTATTACGACCGG
CACCACCGCCCTAGAAGCCCGACGGATAATGGAAGAAAAGGGAGCTAAAGTGTTGGGTATCGTGGCGATCGCCGCACCGT
CTTTTTCCCAGCCCATGGAACTTAGACAGCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Synechocystis sp. PCC 6803

100

100

1

Multiple sequence alignment