Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   HKM25_RS02550 Genome accession   NZ_CP053210
Coordinates   492122..492853 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 6A-10     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 487122..497853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKM25_RS02525 - 488730..489086 (+) 357 WP_000114422.1 hypothetical protein -
  HKM25_RS02530 (HKM25_515) dnaJ 489488..490624 (+) 1137 WP_001066305.1 molecular chaperone DnaJ -
  HKM25_RS02535 (HKM25_516) - 490946..491185 (-) 240 WP_001813906.1 hypothetical protein -
  HKM25_RS02540 (HKM25_517) - 491347..491634 (-) 288 WP_000777760.1 hypothetical protein -
  HKM25_RS02545 (HKM25_518) - 491644..492054 (-) 411 WP_001278301.1 HIT family protein -
  HKM25_RS02550 (HKM25_519) pptA 492122..492853 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  HKM25_RS02555 (HKM25_520) - 492850..493899 (+) 1050 WP_000653767.1 ABC transporter permease -
  HKM25_RS02560 (HKM25_521) - 494067..494396 (-) 330 WP_000132575.1 hypothetical protein -
  HKM25_RS02565 (HKM25_522) - 494672..495010 (+) 339 WP_000682133.1 LytTR family DNA-binding domain-containing protein -
  HKM25_RS02570 (HKM25_523) comE/blpR 495015..495752 (+) 738 WP_001219122.1 LytTR family DNA-binding domain-containing protein Regulator
  HKM25_RS02575 (HKM25_524) - 495765..497105 (+) 1341 WP_000275285.1 sensor histidine kinase -
  HKM25_RS02580 blpC 497150..497305 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=443425 HKM25_RS02550 WP_000889923.1 492122..492853(+) (pptA) [Streptococcus pneumoniae strain 6A-10]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=443425 HKM25_RS02550 WP_000889923.1 492122..492853(+) (pptA) [Streptococcus pneumoniae strain 6A-10]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAAATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTATGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGAACAGAAATTGGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTATTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708