Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   IUJ45_RS00580 Genome accession   NZ_CP064367
Coordinates   131044..131721 (+) Length   225 a.a.
NCBI ID   WP_002246220.1    Uniprot ID   -
Organism   Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 126044..136721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ45_RS00555 (IUJ45_00585) - 126323..126784 (-) 462 WP_002237965.1 YhcH/YjgK/YiaL family protein -
  IUJ45_RS00560 (IUJ45_00590) leuD 126849..127490 (-) 642 WP_002224506.1 3-isopropylmalate dehydratase small subunit -
  IUJ45_RS00565 (IUJ45_00595) - 127552..127806 (-) 255 WP_002213442.1 hypothetical protein -
  IUJ45_RS00570 (IUJ45_00600) leuC 127903..129312 (-) 1410 WP_002213443.1 3-isopropylmalate dehydratase large subunit -
  IUJ45_RS00575 (IUJ45_00605) gshA 129572..130921 (+) 1350 WP_002213445.1 glutamate--cysteine ligase -
  IUJ45_RS10920 - 130895..131017 (-) 123 WP_255265604.1 hypothetical protein -
  IUJ45_RS00580 (IUJ45_00610) ysxA/radC 131044..131721 (+) 678 WP_002246220.1 DNA repair protein RadC Machinery gene
  IUJ45_RS00585 (IUJ45_00615) - 131794..132519 (+) 726 WP_002213448.1 epoxyqueuosine reductase QueH -
  IUJ45_RS10925 - 132542..132670 (-) 129 WP_009347251.1 hypothetical protein -
  IUJ45_RS00590 (IUJ45_00620) - 132672..133952 (+) 1281 WP_002225276.1 CAP domain-containing protein -
  IUJ45_RS00595 (IUJ45_00625) hflX 133957..135135 (+) 1179 WP_082308600.1 GTPase HflX -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25024.85 Da        Isoelectric Point: 5.7262

>NTDB_id=443155 IUJ45_RS00580 WP_002246220.1 131044..131721(+) (ysxA/radC) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTAQTVRSFRQFGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=443155 IUJ45_RS00580 WP_002246220.1 131044..131721(+) (ysxA/radC) [Neisseria meningitidis strain PartJ-Nmeningitidis-RM8376]
ATGAGCATCAAGCAATGGCCGGAAGGCGAAAGACCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCTTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTCGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTTGCCGTAGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGAGCATCGTCCTGTCCGATCCGGA
TACCGTTGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGTTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGTGAAATTGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATCGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTAACGGCGCAAA
CCGTCCGTTCGTTCAGACAGTTCGGGCTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378