Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   HLB22_RS04410 Genome accession   NZ_CP053101
Coordinates   939648..940634 (+) Length   328 a.a.
NCBI ID   WP_170267418.1    Uniprot ID   -
Organism   Staphylococcus aureus strain EDCC5398     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 934648..945634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLB22_RS04385 (HLB22_04385) - 935481..935990 (+) 510 Protein_855 transposase -
  HLB22_RS04390 (HLB22_04390) trpS 936016..937005 (-) 990 WP_000448941.1 tryptophan--tRNA ligase -
  HLB22_RS04395 (HLB22_04395) spxA 937300..937695 (+) 396 WP_000258001.1 transcriptional regulator SpxA -
  HLB22_RS04400 (HLB22_04400) tnpA 937907..938392 (+) 486 WP_000093392.1 IS200/IS605 family transposase -
  HLB22_RS04405 (HLB22_04405) mecA 938808..939527 (+) 720 WP_001217724.1 adaptor protein MecA -
  HLB22_RS04410 (HLB22_04410) coiA 939648..940634 (+) 987 WP_170267418.1 competence protein CoiA family protein Machinery gene
  HLB22_RS04415 (HLB22_04415) pepF 940682..942490 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  HLB22_RS04420 (HLB22_04420) yjbH 942950..943756 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  HLB22_RS04425 (HLB22_04425) - 943779..944144 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  HLB22_RS04430 (HLB22_04430) - 944248..944841 (-) 594 WP_000224621.1 CYTH domain-containing protein -
  HLB22_RS04435 (HLB22_04435) - 945027..945374 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38810.47 Da        Isoelectric Point: 9.5882

>NTDB_id=443025 HLB22_RS04410 WP_170267418.1 939648..940634(+) (coiA) [Staphylococcus aureus strain EDCC5398]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSLFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAHCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLLLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=443025 HLB22_RS04410 WP_170267418.1 939648..940634(+) (coiA) [Staphylococcus aureus strain EDCC5398]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTTTGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTTGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCATTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCCGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATTGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAACCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

98.78

100

0.988
  coiA Staphylococcus aureus MW2

97.561

100

0.976