NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	HKO16_RS19470	Genome accession	NZ_CP053098
Coordinates	359976..360836 (-)	Length	286 a.a.
NCBI ID	WP_001152268.1	Uniprot ID	A0A1E3M8A8
Organism	Acinetobacter baumannii ATCC 17978
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 354976..365836

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HKO16_RS01685 (HKO16_01685)	-	355864..357174 (+)	1311	WP_000753297.1	tetratricopeptide repeat protein	-
HKO16_RS01690 (HKO16_01690)	-	357251..357577 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
HKO16_RS01695 (HKO16_01695)	rlmB	357679..358428 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
HKO16_RS01700 (HKO16_01700)	-	358464..359381 (+)	918	WP_000075016.1	DMT family transporter	-
HKO16_RS01705 (HKO16_01705)	coaE	359378..359974 (-)	597	WP_000874127.1	dephospho-CoA kinase	-
HKO16_RS19470 (HKO16_01710)	pilD	359976..360836 (-)	861	WP_001152268.1	prepilin peptidase	Machinery gene
HKO16_RS01715 (HKO16_01715)	pilC	360836..362062 (-)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
HKO16_RS01720 (HKO16_01720)	pilB	362092..363804 (-)	1713	WP_001274983.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HKO16_RS01725 (HKO16_01725)	tpiA	364095..364889 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
HKO16_RS01730 (HKO16_01730)	secG	364902..365231 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32094.47 Da Isoelectric Point: 7.1041

                                >NTDB_id=443013 HKO16_RS19470 WP_001152268.1 359976..360836(-) (pilD) [Acinetobacter baumannii ATCC 17978]

MQDIIAYFIQNFTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP

IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR

FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=443013 HKO16_RS19470 WP_001152268.1 359976..360836(-) (pilD) [Acinetobacter baumannii ATCC 17978]

ATGCAAGACATCATTGCGTATTTTATTCAAAACTTTACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG

TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA

ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG

ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG

TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA

TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC

TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG

TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGTAAAGAAGGTATGGGCTACG

GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA

CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT

TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A1E3M8A8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	98.601	100	0.986
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.875	94.755	0.51
pilD	Vibrio campbellii strain DS40M4	51.971	97.552	0.507
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437

Detailed information NTG0443013