Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   HKO16_RS16645 Genome accession   NZ_CP053098
Coordinates   3502094..3503095 (-) Length   333 a.a.
NCBI ID   WP_000079196.1    Uniprot ID   A0A1E3M9M7
Organism   Acinetobacter baumannii ATCC 17978     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3497094..3508095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKO16_RS16635 (HKO16_16660) pilY1 3497413..3501267 (-) 3855 WP_000768958.1 PilC/PilY family type IV pilus protein Machinery gene
  HKO16_RS16640 (HKO16_16665) pilX 3501279..3502097 (-) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HKO16_RS16645 (HKO16_16670) pilW 3502094..3503095 (-) 1002 WP_000079196.1 PilW family protein Machinery gene
  HKO16_RS16650 (HKO16_16675) pilV 3503096..3503656 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HKO16_RS16655 (HKO16_16680) fimU 3503650..3504123 (-) 474 WP_001214058.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HKO16_RS16660 (HKO16_16685) ispH 3504293..3505243 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HKO16_RS16665 (HKO16_16690) gmk 3505366..3505995 (+) 630 WP_000015937.1 guanylate kinase -
  HKO16_RS16670 (HKO16_16695) rpoZ 3506068..3506346 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HKO16_RS16675 (HKO16_16700) - 3506385..3506515 (+) 131 Protein_3279 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35803.50 Da        Isoelectric Point: 6.1010

>NTDB_id=443000 HKO16_RS16645 WP_000079196.1 3502094..3503095(-) (pilW) [Acinetobacter baumannii ATCC 17978]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMIDQNVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=443000 HKO16_RS16645 WP_000079196.1 3502094..3503095(-) (pilW) [Acinetobacter baumannii ATCC 17978]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTAGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCGCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGATAGATCAGAATGTGCATGCTGCTGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3M9M7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.7

100

0.997