Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   HKO16_RS16655 Genome accession   NZ_CP053098
Coordinates   3503650..3504123 (-) Length   157 a.a.
NCBI ID   WP_001214058.1    Uniprot ID   A0A1E3M9I3
Organism   Acinetobacter baumannii ATCC 17978     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3498650..3509123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKO16_RS16640 (HKO16_16665) pilX 3501279..3502097 (-) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HKO16_RS16645 (HKO16_16670) pilW 3502094..3503095 (-) 1002 WP_000079196.1 PilW family protein Machinery gene
  HKO16_RS16650 (HKO16_16675) pilV 3503096..3503656 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HKO16_RS16655 (HKO16_16680) fimU 3503650..3504123 (-) 474 WP_001214058.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HKO16_RS16660 (HKO16_16685) ispH 3504293..3505243 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HKO16_RS16665 (HKO16_16690) gmk 3505366..3505995 (+) 630 WP_000015937.1 guanylate kinase -
  HKO16_RS16670 (HKO16_16695) rpoZ 3506068..3506346 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HKO16_RS16675 (HKO16_16700) - 3506385..3506515 (+) 131 Protein_3279 hypothetical protein -
  HKO16_RS16680 (HKO16_16705) - 3506555..3508660 (+) 2106 WP_001117590.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16823.45 Da        Isoelectric Point: 9.3085

>NTDB_id=443002 HKO16_RS16655 WP_001214058.1 3503650..3504123(-) (fimU) [Acinetobacter baumannii ATCC 17978]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPS
SLNWKTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=443002 HKO16_RS16655 WP_001214058.1 3503650..3504123(-) (fimU) [Acinetobacter baumannii ATCC 17978]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCTCT
TCATTAAATTGGAAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3M9I3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987