Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   COCOR_RS05825 Genome accession   NC_017030
Coordinates   1399657..1401018 (-) Length   453 a.a.
NCBI ID   WP_014394014.1    Uniprot ID   -
Organism   Corallococcus coralloides DSM 2259     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1394657..1406018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COCOR_RS05810 (COCOR_01160) - 1395427..1396908 (-) 1482 WP_014394011.1 sensor histidine kinase -
  COCOR_RS05815 (COCOR_01161) - 1397136..1398854 (+) 1719 WP_014394012.1 hypothetical protein -
  COCOR_RS05820 (COCOR_01162) - 1398999..1399643 (+) 645 WP_014394013.1 hypothetical protein -
  COCOR_RS05825 (COCOR_01163) radA 1399657..1401018 (-) 1362 WP_014394014.1 DNA repair protein RadA Machinery gene
  COCOR_RS05830 (COCOR_01164) - 1401199..1401468 (+) 270 WP_014394015.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  COCOR_RS05835 (COCOR_01165) bioB 1401683..1402708 (+) 1026 WP_014394016.1 biotin synthase BioB -
  COCOR_RS05840 (COCOR_01166) bioF 1402705..1403886 (+) 1182 WP_014394017.1 8-amino-7-oxononanoate synthase -
  COCOR_RS05845 (COCOR_01167) bioD 1403876..1404571 (+) 696 WP_014394018.1 dethiobiotin synthase -
  COCOR_RS05850 (COCOR_01168) - 1404687..1404965 (+) 279 WP_014394019.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48070.38 Da        Isoelectric Point: 7.6458

>NTDB_id=44295 COCOR_RS05825 WP_014394014.1 1399657..1401018(-) (radA) [Corallococcus coralloides DSM 2259]
MAKAKTHYTCQACGYQTAKWLGKCPDCGAWSSLLEETEAKVDDKRPAWGASGGASKPVKLQDVTAETEVRRRTGITEFDR
VLGGGVVGGSLVLLGGDPGIGKSTLLLAALDKLSRHGPVLYVSGEESLRQTKMRAERLRVESEAIHLFAETDADRVLQAA
EALKPQALVVDSIQTMYLPELGNAPGSITQVREVAGRLMAFAKRSGVPTFLVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRLLRAHKNRFGSTNEIGVFEMKGAGLVEVADPSALFLSERPQGKSGSVVTSTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEEIPLVGCDLFVNVAGGMQLSEPACDLAVCAALVSSLQNRPLDAKTLVLGEVGLAGEV
RAVGQVEPRLAEAAKMGFQRVVLPAGSARRVEKTKLQVVGVETLSEALAAMFD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=44295 COCOR_RS05825 WP_014394014.1 1399657..1401018(-) (radA) [Corallococcus coralloides DSM 2259]
ATGGCGAAGGCGAAGACGCACTACACCTGTCAGGCCTGCGGCTACCAGACGGCGAAGTGGCTCGGGAAGTGTCCTGACTG
CGGGGCCTGGAGCTCGCTCCTGGAGGAGACCGAAGCGAAGGTGGACGACAAGCGCCCGGCGTGGGGCGCGTCCGGGGGCG
CCTCCAAGCCGGTGAAGCTGCAGGACGTGACGGCGGAGACGGAAGTCCGTCGGCGCACGGGCATCACGGAGTTCGACCGC
GTCCTGGGCGGCGGCGTGGTGGGCGGTTCACTGGTGCTGTTGGGCGGCGACCCGGGCATCGGCAAGTCCACGCTGCTCTT
GGCGGCGCTGGACAAGCTGTCGCGGCACGGGCCGGTGCTCTACGTGTCGGGTGAAGAGAGCCTGCGGCAGACGAAGATGC
GCGCGGAGCGCCTGCGGGTGGAGAGTGAGGCCATCCACCTGTTCGCGGAGACGGACGCGGACCGGGTGCTCCAGGCGGCG
GAGGCGCTGAAGCCGCAGGCGCTGGTGGTGGACTCCATCCAGACCATGTACCTGCCGGAGCTGGGCAACGCGCCGGGCAG
CATCACCCAGGTGCGCGAGGTGGCGGGCCGGCTGATGGCGTTCGCCAAGCGCAGCGGGGTGCCCACGTTCCTGGTGGGCC
ACGTGACGAAGGAAGGCTCCATCGCGGGTCCCCGGGTGCTGGAGCACATGGTGGACACGGTCCTCTACTTCGAGGGCGAG
CGCGGCCACCCGTTCCGGCTCCTGCGCGCGCACAAGAACCGCTTCGGCAGCACCAACGAGATTGGCGTCTTCGAGATGAA
GGGCGCGGGGCTGGTGGAGGTGGCGGACCCGTCCGCGCTGTTCCTCTCCGAGCGTCCGCAGGGCAAGTCCGGCAGCGTGG
TGACGAGCACGCTCAACGGCACGCGGCCACTGTTGGTGGAGGTGCAGGCGCTGGTGGCGCCCACGGGCTACGGCACGGCG
AGGCGCACGGCGATTGGCGTGGACGGCAACCGCGTGGCGCTGCTGGCGGCGGTGCTGGAGAAGAAGGAGGAGATTCCACT
GGTGGGCTGCGACCTGTTCGTCAACGTGGCGGGCGGCATGCAGTTGAGCGAACCGGCGTGCGACCTGGCGGTGTGCGCGG
CGCTGGTGAGCAGCCTGCAGAACCGGCCGTTGGACGCGAAGACGCTGGTGTTGGGAGAGGTGGGGCTCGCAGGCGAGGTG
CGCGCGGTGGGCCAGGTGGAGCCGAGGCTCGCGGAGGCCGCGAAGATGGGCTTCCAGCGGGTGGTGCTGCCAGCGGGCAG
CGCGCGGCGCGTGGAGAAGACGAAGCTCCAGGTGGTGGGCGTGGAGACCCTGAGCGAAGCGCTGGCGGCGATGTTCGACT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

Subunit ChlI of Mg-chelatase (ChlI)

(351-425)

AAA domain (AAA_25)

(71-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.876

99.779

0.528
  radA Streptococcus mitis NCTC 12261

52.318

100

0.523
  radA Streptococcus pneumoniae Rx1

52.318

100

0.523
  radA Streptococcus pneumoniae D39

52.318

100

0.523
  radA Streptococcus pneumoniae R6

52.318

100

0.523
  radA Streptococcus pneumoniae TIGR4

52.318

100

0.523
  radA Streptococcus mitis SK321

52.097

100

0.521

Multiple sequence alignment