Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   IUD20_RS10350 Genome accession   NZ_CP064334
Coordinates   2297165..2298775 (-) Length   536 a.a.
NCBI ID   WP_004090372.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. fastidiosa strain Bakersfield-8     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2292165..2303775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUD20_RS10335 (IUD20_10335) pilA/pilAI 2292457..2292897 (+) 441 WP_004090375.1 pilin Machinery gene
  IUD20_RS10340 (IUD20_10340) pilB 2293740..2295473 (+) 1734 WP_004090374.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IUD20_RS10345 (IUD20_10345) - 2295567..2296979 (-) 1413 WP_004090373.1 sigma-54 dependent transcriptional regulator -
  IUD20_RS10350 (IUD20_10350) pilS 2297165..2298775 (-) 1611 WP_004090372.1 ATP-binding protein Regulator
  IUD20_RS10355 (IUD20_10355) sucC 2299030..2300193 (+) 1164 WP_004090371.1 ADP-forming succinate--CoA ligase subunit beta -
  IUD20_RS10360 (IUD20_10360) sucD 2300222..2301094 (+) 873 WP_004090370.1 succinate--CoA ligase subunit alpha -
  IUD20_RS10365 (IUD20_10365) - 2301452..2302072 (+) 621 WP_004090369.1 hypothetical protein -

Sequence

Protein


Download         Length: 536 a.a.        Molecular weight: 59135.47 Da        Isoelectric Point: 6.1390

>NTDB_id=442876 IUD20_RS10350 WP_004090372.1 2297165..2298775(-) (pilS) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-8]
MLFSASLIHRIEFAPQRELYFLALYRILEAGLIAALVFSPVSLLVDPESDPHLGTVVAVGYLLLATILLVWGRNERWFTP
LVFGSTVADILAATLAIHALPKASAGIAMMLLFNVAAAAILLRLRFSMILAWIAGVAMLVEYIWTVLSEGDSSRSLAELL
MFFTSYTAVAYMCHQAAQRARYSQALAEKRRAQIVNLAEINELIIRRMRTGVLVVDAANRIGLSNETAAALLGYDRQLVE
SDYDLATVAPELIMRLKCWRIGRHYEDTPLRLAPDQPEVQPRFVSLLADSGLTLIFLDDVSVVSRRAESLTLLALGRFSA
SLAHEIRNPLAAIKHASQLLEESSNLDKGDQRLLDIILKQCQRTNGIVESVLGLARRERANPENLDLVGFVSRFVDEYRQ
TLSSEYDNLEIQTLHSTVQALVDPRHLYQILAVLTHNALRYGRFPDTPAQVRIEVVYTGGSVGINVLDQGPGIPDAAVLQ
LFQPFFTTSDHGTGLGLYIARELCNANQSNLEYVAIPGGGACFRITLPGPYALIPN

Nucleotide


Download         Length: 1611 bp        

>NTDB_id=442876 IUD20_RS10350 WP_004090372.1 2297165..2298775(-) (pilS) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-8]
GTGTTGTTCAGCGCTTCGCTGATTCATCGGATCGAATTTGCCCCGCAGCGTGAACTTTATTTTCTCGCGTTGTATCGGAT
CTTGGAGGCTGGATTGATCGCGGCCCTGGTGTTCAGTCCGGTGTCGCTATTGGTGGATCCTGAGAGTGATCCACATTTGG
GCACGGTTGTCGCTGTCGGTTATTTGCTGTTGGCTACCATTTTGTTGGTCTGGGGTCGTAATGAGCGTTGGTTCACGCCA
TTAGTCTTTGGAAGTACTGTCGCCGACATTTTGGCTGCCACTCTTGCTATTCACGCTCTGCCTAAAGCCAGTGCCGGCAT
TGCGATGATGTTGTTGTTTAACGTTGCTGCCGCCGCCATCTTATTGCGGTTGCGTTTCAGCATGATCCTGGCTTGGATTG
CTGGGGTTGCGATGCTTGTGGAATACATCTGGACTGTACTCAGTGAGGGTGACTCCTCACGTTCACTGGCCGAGCTCCTT
ATGTTTTTCACCAGCTACACTGCAGTGGCGTATATGTGTCATCAGGCCGCGCAGCGGGCTAGATATAGCCAAGCTCTGGC
TGAAAAGCGCCGTGCCCAGATAGTCAACTTGGCAGAGATCAATGAGCTGATTATCCGACGTATGCGGACGGGTGTGTTGG
TGGTGGATGCTGCTAATCGAATCGGTTTGAGTAACGAAACTGCAGCTGCGTTGCTGGGATACGACAGACAATTGGTCGAG
AGTGATTACGATCTCGCTACGGTTGCTCCGGAGTTGATAATGCGTCTGAAGTGTTGGCGTATTGGTCGACACTACGAAGA
TACTCCGTTGCGATTAGCGCCTGATCAACCTGAGGTTCAGCCTCGCTTTGTGAGTTTGCTTGCCGACAGTGGATTGACAT
TAATTTTCCTTGATGATGTCAGTGTTGTTTCACGCCGTGCCGAATCGTTGACTTTGTTGGCGCTTGGACGTTTTTCAGCC
AGTTTGGCGCACGAGATTCGTAATCCTTTGGCTGCAATTAAACATGCATCGCAGCTGTTGGAAGAGTCCTCCAATCTTGA
CAAAGGCGATCAAAGGCTGTTGGACATTATTCTAAAGCAGTGCCAGCGGACCAATGGGATTGTGGAGAGCGTGCTTGGTT
TGGCAAGACGCGAACGTGCTAACCCGGAAAATTTGGATTTGGTCGGTTTTGTGTCGCGATTTGTCGATGAATACCGCCAG
ACATTGTCAAGCGAGTATGACAATCTGGAGATACAAACGTTGCACAGTACCGTGCAGGCACTGGTGGATCCACGCCACTT
GTACCAGATCCTCGCTGTCCTTACCCACAACGCATTGCGTTATGGCCGCTTTCCGGATACTCCGGCACAGGTGCGTATTG
AGGTGGTATATACCGGAGGCAGCGTGGGGATCAATGTCCTTGATCAGGGGCCTGGTATACCCGATGCGGCTGTTTTGCAG
CTTTTTCAGCCTTTTTTCACTACTTCCGACCATGGTACGGGGCTTGGTCTATATATCGCTCGTGAGCTGTGCAATGCGAA
TCAATCCAATCTTGAGTACGTGGCCATTCCAGGGGGAGGGGCTTGTTTCCGGATTACTTTGCCGGGTCCGTATGCATTGA
TTCCGAATTGA

Domains

Predicted by InterProScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(314-378)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(423-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

37.044

97.201

0.36