Detailed information NTG0442833

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: IUD20_RS02400
• Genome accession: NZ_CP064334
• Coordinates: 565166..566446 (+)
• Length: 426 a.a.
• NCBI ID: WP_004090165.1
• Uniprot ID: Q87E50
• Organism: Xylella fastidiosa subsp. fastidiosa strain Bakersfield-8
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 560166..571446

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUD20_RS02380 (IUD20_02380)	-	560609..561070 (-)	462	WP_004086550.1	hypothetical protein	-
IUD20_RS02390 (IUD20_02390)	tig	562979..564274 (+)	1296	WP_004090161.1	trigger factor	-
IUD20_RS02395 (IUD20_02395)	clpP	564412..565038 (+)	627	WP_011097655.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
IUD20_RS02400 (IUD20_02400)	clpX	565166..566446 (+)	1281	WP_004090165.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
IUD20_RS02405 (IUD20_02405)	lon	566598..569069 (+)	2472	WP_012382467.1	endopeptidase La	-
IUD20_RS02410 (IUD20_02410)	-	569290..569574 (+)	285	WP_004090176.1	HU family DNA-binding protein	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 47129.13 Da
• Isoelectric Point: 5.6270

>NTDB_id=442833 IUD20_RS02400 WP_004090165.1 565166..566446(+) (clpX) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-8]
MSEDRQSRSGDGNKILYCSFCGKSQREVRKLIAGPSVFICDECVELCNDIIREELEEKSQSARSSLPKPKEILEVLDQYV
IGQQRAKRTLAVAVYNHYKRIESRHKNDDIELAKSNILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDV
ENIIQKLLHKCDYDVEKAQHGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTKNILFICGGAFAGLDKVIQQRCNEVGGIGFGVKVKSSESKRDVGKVLAGVEPEDLIKFGLIPEFVGRLPVVATLDELD
ESALVKILTEPKNAITKQFKKLFEMENVELEFRQDALSAVARKALKRKTGARGLRTIVELVLLDTMYELPSQEGISKVVV
DESVIENKSEPYLIYQTMPAKVASGE

Nucleotide

• Length: 1281 bp

>NTDB_id=442833 IUD20_RS02400 WP_004090165.1 565166..566446(+) (clpX) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-8]
ATGAGCGAAGACCGGCAAAGCCGTTCTGGTGACGGAAATAAGATTCTTTACTGCTCATTCTGCGGTAAAAGCCAGCGTGA
GGTTCGCAAGCTGATCGCAGGTCCAAGCGTATTCATTTGTGATGAATGCGTTGAGTTGTGTAACGATATTATTCGCGAGG
AACTGGAAGAGAAGTCGCAATCTGCGCGTTCCAGTTTGCCTAAGCCCAAGGAGATACTTGAGGTTTTGGATCAGTATGTC
ATTGGCCAGCAGCGTGCTAAGAGGACTCTTGCTGTAGCCGTCTACAATCATTATAAACGGATCGAAAGTCGGCATAAGAA
TGACGACATCGAATTGGCTAAATCTAATATTTTGTTGGTTGGCCCAACAGGCTCCGGCAAGACATTGCTTGCCGAGACAT
TGGCGCGTTTGCTGAATGTGCCTTTCACGATTGCCGATGCAACCACATTGACTGAGGCTGGCTATGTTGGTGAGGACGTG
GAGAATATTATTCAGAAGTTGTTACATAAGTGTGATTACGACGTTGAAAAGGCGCAACATGGGATCGTCTACATTGATGA
AATAGATAAGATTTCCCGTAAGAGTGAGAATCCATCAATTACCCGAGATGTTTCTGGTGAGGGTGTGCAGCAGGCATTGC
TGAAATTGATAGAAGGTACGGTTGCTTCTGTGCCTCCTCAGGGTGGTCGCAAGCATCCACAGCAGGAATTCCTGCAGGTC
GATACCAAAAATATTTTATTCATCTGTGGCGGTGCTTTTGCTGGTCTAGATAAAGTGATCCAACAGCGTTGCAATGAAGT
TGGTGGTATTGGCTTTGGTGTTAAGGTCAAAAGCTCAGAGAGTAAGCGCGATGTTGGTAAGGTACTAGCTGGTGTCGAGC
CAGAGGACCTGATTAAGTTTGGGTTAATCCCTGAATTCGTTGGGCGATTGCCAGTTGTAGCTACACTTGATGAGCTGGAT
GAGTCGGCTTTGGTTAAAATTTTAACCGAGCCAAAGAACGCTATTACAAAGCAGTTCAAAAAGCTGTTTGAGATGGAGAA
CGTAGAGTTGGAGTTCCGTCAGGACGCGCTTTCAGCAGTGGCTAGGAAAGCTCTTAAGCGCAAGACTGGTGCGCGGGGTC
TCCGTACTATTGTTGAGTTGGTTCTGCTGGATACCATGTACGAACTTCCTTCTCAGGAAGGTATTAGTAAGGTTGTTGTC
GATGAATCGGTTATTGAAAATAAATCTGAGCCTTATCTGATTTATCAAACGATGCCTGCAAAGGTTGCTTCCGGCGAATG
A

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (114-312)

• ClpX C4-type zinc finger (zf-C4_ClpX) (16-53)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (319-396)

3D structure

• AlphaFold DB: Q87E50

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.25	93.897	0.585
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.025	93.427	0.514